RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W SND1Q04007 877 aa11.6□□□□□ -0.55
SIM1YIL123W ADE13Q05911 482 aaKnown RBP11.6□□□□□ -0.55
SIM1YIL123W VHS3Q08438 674 aa11.6□□□□□ -0.55
SIM1YIL123W GPM2Q12008 311 aa11.6□□□□□ -0.55
SIM1YIL123W PKH2Q12236 1081 aaKnown RBP11.6□□□□□ -0.55
SIM1YIL123W HAP2P06774 265 aa11.6□□□□□ -0.55
SIM1YIL123W PRP16P15938 1071 aaPredicted RBP11.6□□□□□ -0.55
SIM1YIL123W RAD5P32849 1169 aaPredicted RBP11.6□□□□□ -0.55
SIM1YIL123W YBR032WP38223 100 aa11.6□□□□□ -0.55
SIM1YIL123W PRK1P40494 810 aa11.6□□□□□ -0.55
SIM1YIL123W YPR003CP53394 754 aa11.6□□□□□ -0.55
SIM1YIL123W NMA111P53920 997 aa11.6□□□□□ -0.55
SIM1YIL123W BET4Q00618 327 aa11.6□□□□□ -0.55
SIM1YIL123W MAG2Q06436 670 aaKnown RBP11.6□□□□□ -0.55
SIM1YIL123W CIT2P08679 460 aa11.59□□□□□ -0.55
SIM1YIL123W CDC20P26309 610 aa11.59□□□□□ -0.55
SIM1YIL123W NIP1P32497 812 aaKnown RBP11.59□□□□□ -0.55
SIM1YIL123W LDH1P38139 375 aa11.59□□□□□ -0.55
SIM1YIL123W YBR053CP38235 358 aa11.59□□□□□ -0.55
SIM1YIL123W YBR062CP38239 180 aa11.59□□□□□ -0.55
SIM1YIL123W TAH11P47112 604 aa11.59□□□□□ -0.55
SIM1YIL123W SLT2Q00772 484 aa11.59□□□□□ -0.55
SIM1YIL123W CUE5Q08412 411 aaKnown RBP11.59□□□□□ -0.55
SIM1YIL123W DDC1Q08949 612 aa11.59□□□□□ -0.55
SIM1YIL123W NBP2Q12163 236 aa11.59□□□□□ -0.55
SIM1YIL123W TSR4P25040 408 aa11.58□□□□□ -0.56
SIM1YIL123W SLX1P38324 304 aa11.58□□□□□ -0.56
SIM1YIL123W BRL1P38770 471 aa11.58□□□□□ -0.56
SIM1YIL123W REV7P38927 245 aa11.58□□□□□ -0.56
SIM1YIL123W RRT5P43607 289 aa11.58□□□□□ -0.56
SIM1YIL123W SPO74P45819 413 aa11.58□□□□□ -0.56
SIM1YIL123W MRPL7P36519 292 aa11.57□□□□□ -0.56
SIM1YIL123W POA1P38218 177 aa11.57□□□□□ -0.56
SIM1YIL123W MNN11P46985 422 aaKnown RBP11.57□□□□□ -0.56
SIM1YIL123W YNL115CP53925 644 aa11.57□□□□□ -0.56
SIM1YIL123W ADA2Q02336 434 aa11.57□□□□□ -0.56
SIM1YIL123W NOB1Q08444 459 aaKnown RBP11.57□□□□□ -0.56
SIM1YIL123W GPM3Q12326 303 aa11.57□□□□□ -0.56
SIM1YIL123W AI5_ALPHAQ9ZZX1 630 aa11.57□□□□□ -0.56
SIM1YIL123W MET4P32389 672 aa11.56□□□□□ -0.56
SIM1YIL123W YBR284WP38150 797 aa11.56□□□□□ -0.56
SIM1YIL123W YBP1P38315 674 aa11.56□□□□□ -0.56
SIM1YIL123W YHR202WP38887 602 aa11.56□□□□□ -0.56
SIM1YIL123W PRM9P39551 298 aa11.56□□□□□ -0.56
SIM1YIL123W CDC1P40986 491 aa11.56□□□□□ -0.56
SIM1YIL123W IML2P47031 731 aa11.56□□□□□ -0.56
SIM1YIL123W KTR6P54070 446 aa11.56□□□□□ -0.56
SIM1YIL123W VPS9P54787 451 aa11.56□□□□□ -0.56
SIM1YIL123W VPS16Q03308 798 aa11.56□□□□□ -0.56
SIM1YIL123W AIM32Q04689 311 aa11.56□□□□□ -0.56
SIM1YIL123W AAD4Q07747 329 aa11.56□□□□□ -0.56
SIM1YIL123W CMS1Q07897 291 aaKnown RBP11.56□□□□□ -0.56
SIM1YIL123W NRT1Q08485 598 aa11.56□□□□□ -0.56
SIM1YIL123W YPL225WQ08971 146 aaKnown RBP11.56□□□□□ -0.56
SIM1YIL123W TEF1P02994 458 aaKnown RBP11.55□□□□□ -0.56
SIM1YIL123W ETR1P38071 380 aa11.55□□□□□ -0.56
SIM1YIL123W HMT1P38074 348 aa11.55□□□□□ -0.56
SIM1YIL123W HEK2P38199 381 aaKnown RBP RIP-Chip data11.55□□□□□ -0.56 RIP-Chip
SIM1YIL123W BIT2P38346 545 aa11.55□□□□□ -0.56
SIM1YIL123W XDJ1P39102 459 aa11.55□□□□□ -0.56
SIM1YIL123W STL1P39932 569 aa11.55□□□□□ -0.56
SIM1YIL123W YEL023CP39992 682 aa11.55□□□□□ -0.56
SIM1YIL123W SUB1P54000 292 aaKnown RBP11.55□□□□□ -0.56
SIM1YIL123W SHE9Q04172 456 aa11.55□□□□□ -0.56
SIM1YIL123W HRD3Q05787 833 aa11.55□□□□□ -0.56
SIM1YIL123W SSC1P0CS90 654 aaKnown RBP11.54□□□□□ -0.56
SIM1YIL123W RGR1P19263 1082 aa11.54□□□□□ -0.56
SIM1YIL123W SDH2P21801 266 aa11.54□□□□□ -0.56
SIM1YIL123W KES1P35844 434 aaKnown RBP11.54□□□□□ -0.56
SIM1YIL123W LIN1P38852 340 aaPredicted RBP11.54□□□□□ -0.56
SIM1YIL123W FHL1P39521 936 aa11.54□□□□□ -0.56
SIM1YIL123W TGL3P40308 642 aa11.54□□□□□ -0.56
SIM1YIL123W GUF1P46943 645 aa11.54□□□□□ -0.56
SIM1YIL123W LIA1P47120 325 aaKnown RBP11.54□□□□□ -0.56
SIM1YIL123W EFG1Q3E705 233 aaKnown RBP11.54□□□□□ -0.56
SIM1YIL123W PAB1P04147 577 aaKnown RBP RIP-Chip data11.53□□□□□ -0.56not detected
SIM1YIL123W ERR1P0CX10 437 aa11.53□□□□□ -0.56
SIM1YIL123W ERR2P0CX11 437 aa11.53□□□□□ -0.56
SIM1YIL123W GPA2P10823 449 aa11.53□□□□□ -0.56
SIM1YIL123W FSH1P38777 243 aaKnown RBP11.53□□□□□ -0.56
SIM1YIL123W TFG1P41895 735 aaPredicted RBP11.53□□□□□ -0.56
SIM1YIL123W ERR3P42222 437 aa11.53□□□□□ -0.56
SIM1YIL123W VTC4P47075 721 aa11.53□□□□□ -0.56
SIM1YIL123W YGR127WP53275 312 aa11.53□□□□□ -0.56
SIM1YIL123W YET3Q07451 203 aa11.53□□□□□ -0.56
SIM1YIL123W CBC2Q08920 208 aaKnown RBP RIP-Chip data11.53□□□□□ -0.56not detected
SIM1YIL123W YLR053CQ12026 108 aa11.53□□□□□ -0.56
SIM1YIL123W CCP1P00431 361 aa11.52□□□□□ -0.56
SIM1YIL123W URA10P30402 227 aa11.52□□□□□ -0.56
SIM1YIL123W PEP7P32609 515 aa11.52□□□□□ -0.56
SIM1YIL123W RIM4P38741 713 aa11.52□□□□□ -0.56
SIM1YIL123W PPE1P38796 400 aa11.52□□□□□ -0.56
SIM1YIL123W TAF6P53040 516 aa11.52□□□□□ -0.56
SIM1YIL123W FMP30Q02883 468 aa11.52□□□□□ -0.56
SIM1YIL123W INA17Q02888 182 aa11.52□□□□□ -0.56
SIM1YIL123W YMR160WQ03823 816 aa11.52□□□□□ -0.56
SIM1YIL123W BUD22Q04347 519 aaKnown RBP11.52□□□□□ -0.56
SIM1YIL123W YDR338CQ05497 695 aa11.52□□□□□ -0.56
SIM1YIL123W ECM30Q06673 1274 aa11.52□□□□□ -0.56
SIM1YIL123W SPE3Q12074 293 aaKnown RBP11.52□□□□□ -0.56
Retrieved 100 of 5,963 RNA–protein pairs in 60.1 ms