RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	SNF12	P53628	566 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	JJJ1	P53863	590 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	SEC5	P89102	971 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	CTI6	Q08923	506 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	YMR084W	A2P2R3	262 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	RPS17A	P02407	136 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	RPS17B	P14127	136 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	DAP2	P18962	818 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	ARG1	P22768	420 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	LCB1	P25045	558 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	STB6	P36085	766 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	OSW5	P40219	148 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	THI6	P41835	540 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	PSP2	P50109	593 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	DPB4	Q04603	196 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	RSF1	Q05043	376 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	SKG3	Q06315	1026 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	BMS1	Q08965	1183 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	GCN4	P03069	281 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	SES1	P07284	462 aa	Known RBP	4.61	□□□□□ -1.67
CDC9	YDL164C	MIS1	P09440	975 aa	Known RBP	4.61	□□□□□ -1.67
CDC9	YDL164C	BIK1	P11709	440 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	TRK2	P28584	889 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	RMA1	P36001	430 aa	Known RBP	4.61	□□□□□ -1.67
CDC9	YDL164C	HEL1	P36113	551 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	CDS1	P38221	457 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	FTH1	P38310	465 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YEL025C	P39991	1188 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	NEO1	P40527	1151 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	BST1	P43571	1029 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	STU2	P46675	888 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YDL183C	P48569	320 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	OCA1	P50946	238 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC9	YDL164C	HST3	P53687	447 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YOR022C	Q12204	715 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	SPE4	Q12455	300 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	URA3	P03962	267 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	SDS22	P36047	338 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	NPR3	P38742	1146 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YJR061W	P40355	935 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YJL045W	P47052	634 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	VPS9	P54787	451 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CDC9	YDL164C	COX17	Q12287	69 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	SUL2	Q12325	893 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	ISA2	Q12425	185 aa		4.61	□□□□□ -1.67
CDC9	YDL164C	DIF1	O13577	133 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	APN1	P22936	367 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	ARP2	P32381	391 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	IME2	P32581	645 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	GYP6	P32806	458 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	DEF1	P35732	738 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	PPE1	P38796	400 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	SMF1	P38925	575 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	SAP4	P53036	818 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	NAM8	Q00539	523 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	TIM50	Q02776	476 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	RAD30	Q04049	632 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	SSL1	Q04673	461 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	AAD4	Q07747	329 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
CDC9	YDL164C	YPL272C	Q08984	517 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	STF1	P01098	86 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	CLB1	P24868	471 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	DGR2	P32330	852 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	KSP1	P38691	1029 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	MIP6	P38760	659 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	BUD16	P39988	312 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	CEP3	P40969	608 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	LYS4	P49367	693 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	UBP15	P50101	1230 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	NOG2	P53742	486 aa	Known RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	CFT2	Q12102	859 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC9	YDL164C	GPM3	Q12326	303 aa		4.6	□□□□□ -1.67
CDC9	YDL164C	FBP1	P09201	348 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	ERV1	P27882	189 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	MGM1	P32266	881 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	RPT5	P33297	434 aa	Known RBP	4.59	□□□□□ -1.67
CDC9	YDL164C	RPT3	P33298	428 aa	Known RBP	4.59	□□□□□ -1.67
CDC9	YDL164C	MET18	P40469	1032 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CDC9	YDL164C	BUD8	P41698	603 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	FOL2	P51601	243 aa	Known RBP	4.59	□□□□□ -1.67
CDC9	YDL164C	FMP45	Q07651	309 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	AVO1	Q08236	1176 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	APL5	Q08951	932 aa	Known RBP	4.59	□□□□□ -1.67
CDC9	YDL164C	ATG11	Q12527	1178 aa		4.59	□□□□□ -1.67
CDC9	YDL164C	CET1	O13297	549 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	PRP22	P24384	1145 aa	Known RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	MDL2	P33311	773 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	THI2	P38141	450 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	RPN3	P40016	523 aa	Known RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	KHA1	P40309	873 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	PRM2	P40534	656 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	SHE4	P51534	789 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	TAM41	P53230	385 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	NNF2	P53253	936 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	GYL1	Q04322	720 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	GPB1	Q08886	897 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	NOP58	Q12499	511 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms