RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C GRX6Q12438 231 aa6.41□□□□□ -1.38
DEF1YKL054C YOL159C-AQ3E769 90 aa6.41□□□□□ -1.38
DEF1YKL054C STF1P01098 86 aa6.4□□□□□ -1.38
DEF1YKL054C POL3P15436 1097 aa6.4□□□□□ -1.38
DEF1YKL054C SWI4P25302 1093 aaKnown RBP6.4□□□□□ -1.38
DEF1YKL054C SED4P25365 1065 aa6.4□□□□□ -1.38
DEF1YKL054C MDL2P33311 773 aa6.4□□□□□ -1.38
DEF1YKL054C GIC1P38785 314 aa6.4□□□□□ -1.38
DEF1YKL054C ARF3P40994 183 aaRIP-Chip data6.4□□□□□ -1.38not detected
DEF1YKL054C DUO1P53168 247 aaKnown RBP6.4□□□□□ -1.38
DEF1YKL054C BRE5P53741 515 aaKnown RBP6.4□□□□□ -1.38
DEF1YKL054C RPN7Q06103 429 aaKnown RBP6.4□□□□□ -1.38
DEF1YKL054C GCN4P03069 281 aa6.4□□□□□ -1.39
DEF1YKL054C SUI3P09064 285 aaKnown RBP6.4□□□□□ -1.39
DEF1YKL054C YEL076C-AP0CX16 216 aa6.4□□□□□ -1.39
DEF1YKL054C YLR464WP0CX17 216 aa6.4□□□□□ -1.39
DEF1YKL054C UIP5P36137 443 aa6.4□□□□□ -1.39
DEF1YKL054C YAR028WP39548 234 aa6.4□□□□□ -1.39
DEF1YKL054C YEL076CP39971 216 aa6.4□□□□□ -1.39
DEF1YKL054C PRK1P40494 810 aa6.4□□□□□ -1.39
DEF1YKL054C MRX6P48564 524 aa6.4□□□□□ -1.39
DEF1YKL054C FCP1Q03254 732 aa6.4□□□□□ -1.39
DEF1YKL054C SKS1Q12505 502 aa6.4□□□□□ -1.39
DEF1YKL054C PCD1Q12524 340 aa6.4□□□□□ -1.39
DEF1YKL054C RPC40P07703 335 aaKnown RBP6.39□□□□□ -1.39
DEF1YKL054C UTP9P38882 575 aaKnown RBP6.39□□□□□ -1.39
DEF1YKL054C YFL052WP43551 465 aa6.39□□□□□ -1.39
DEF1YKL054C NCE103P53615 221 aa6.39□□□□□ -1.39
DEF1YKL054C BSC5P53755 489 aa6.39□□□□□ -1.39
DEF1YKL054C SEC5P89102 971 aa6.39□□□□□ -1.39
DEF1YKL054C LEE1Q02799 301 aaKnown RBP6.39□□□□□ -1.39
DEF1YKL054C FDC1Q03034 503 aa6.39□□□□□ -1.39
DEF1YKL054C ECM22Q05958 814 aaPredicted RBP6.39□□□□□ -1.39
DEF1YKL054C TGL5Q12043 749 aa6.39□□□□□ -1.39
DEF1YKL054C ISA2Q12425 185 aa6.39□□□□□ -1.39
DEF1YKL054C PDH1Q12428 516 aaKnown RBP6.39□□□□□ -1.39
DEF1YKL054C LCB1P25045 558 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C UGA2P38067 497 aa6.38□□□□□ -1.39
DEF1YKL054C RTT105P40063 208 aa6.38□□□□□ -1.39
DEF1YKL054C YER158CP40095 573 aa6.38□□□□□ -1.39
DEF1YKL054C KHA1P40309 873 aa6.38□□□□□ -1.39
DEF1YKL054C GCV1P48015 400 aa6.38□□□□□ -1.39
DEF1YKL054C MNT2P53059 558 aa6.38□□□□□ -1.39
DEF1YKL054C YNR071CP53757 342 aa6.38□□□□□ -1.39
DEF1YKL054C CIK1Q01649 594 aa6.38□□□□□ -1.39
DEF1YKL054C YPL107WQ02873 248 aa6.38□□□□□ -1.39
DEF1YKL054C RAD33Q04231 177 aa6.38□□□□□ -1.39
DEF1YKL054C YLR407WQ06070 228 aa6.38□□□□□ -1.39
DEF1YKL054C CMP2P14747 604 aa6.38□□□□□ -1.39
DEF1YKL054C YCK2P23292 546 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C NFS1P25374 497 aa6.38□□□□□ -1.39
DEF1YKL054C PPQ1P32945 549 aa6.38□□□□□ -1.39
DEF1YKL054C RIB7P33312 244 aa6.38□□□□□ -1.39
DEF1YKL054C FTH1P38310 465 aa6.38□□□□□ -1.39
DEF1YKL054C LCB2P40970 561 aa6.38□□□□□ -1.39
DEF1YKL054C PSP2P50109 593 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C NOG2P53742 486 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C SFB2P53953 876 aa6.38□□□□□ -1.39
DEF1YKL054C ERV25P54837 211 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C SRT1Q03175 343 aa6.38□□□□□ -1.39
DEF1YKL054C APL5Q08951 932 aaKnown RBP6.38□□□□□ -1.39
DEF1YKL054C THI21Q08975 551 aa6.38□□□□□ -1.39
DEF1YKL054C FRE6Q12473 712 aa6.38□□□□□ -1.39
DEF1YKL054C DAL80P26343 269 aa6.37□□□□□ -1.39
DEF1YKL054C IME2P32581 645 aa6.37□□□□□ -1.39
DEF1YKL054C GND1P38720 489 aaKnown RBP6.37□□□□□ -1.39
DEF1YKL054C PIK1P39104 1066 aa6.37□□□□□ -1.39
DEF1YKL054C GPB2P39717 880 aa6.37□□□□□ -1.39
DEF1YKL054C HDA1P53973 706 aa6.37□□□□□ -1.39
DEF1YKL054C YSA1Q01976 231 aa6.37□□□□□ -1.39
DEF1YKL054C OAZ1Q02803 292 aa6.37□□□□□ -1.39
DEF1YKL054C ISN1Q99312 450 aa6.37□□□□□ -1.39
DEF1YKL054C DIF1O13577 133 aa6.37□□□□□ -1.39
DEF1YKL054C RPP1AP05318 106 aaPredicted RBP6.37□□□□□ -1.39
DEF1YKL054C MIS1P09440 975 aaKnown RBP6.37□□□□□ -1.39
DEF1YKL054C GCS1P35197 352 aa6.37□□□□□ -1.39
DEF1YKL054C REI1P38344 393 aaPredicted RBP6.37□□□□□ -1.39
DEF1YKL054C RFC1P38630 861 aaKnown RBP6.37□□□□□ -1.39
DEF1YKL054C NOP9P47077 666 aaKnown RBP6.37□□□□□ -1.39
DEF1YKL054C RSA3Q05942 220 aaKnown RBP6.37□□□□□ -1.39
DEF1YKL054C NSI1Q12457 570 aa6.37□□□□□ -1.39
DEF1YKL054C GPM1P00950 247 aaKnown RBP6.36□□□□□ -1.39
DEF1YKL054C ADE3P07245 946 aaKnown RBP6.36□□□□□ -1.39
DEF1YKL054C SSP120P39931 234 aaKnown RBP6.36□□□□□ -1.39
DEF1YKL054C GDI1P39958 451 aaKnown RBP6.36□□□□□ -1.39
DEF1YKL054C YEL025CP39991 1188 aa6.36□□□□□ -1.39
DEF1YKL054C UBP7P40453 1071 aa6.36□□□□□ -1.39
DEF1YKL054C PRM2P40534 656 aa6.36□□□□□ -1.39
DEF1YKL054C ALT1P52893 592 aa6.36□□□□□ -1.39
DEF1YKL054C IMA1P53051 589 aa6.36□□□□□ -1.39
DEF1YKL054C YGR035CP53222 116 aa6.36□□□□□ -1.39
DEF1YKL054C PRO2P54885 456 aaKnown RBP6.36□□□□□ -1.39
DEF1YKL054C SWA2Q06677 668 aa6.36□□□□□ -1.39
DEF1YKL054C NMD4Q12129 218 aa6.36□□□□□ -1.39
DEF1YKL054C APN1P22936 367 aa6.35□□□□□ -1.39
DEF1YKL054C AKL1P38080 1108 aaKnown RBP6.35□□□□□ -1.39
DEF1YKL054C RPN3P40016 523 aaKnown RBP6.35□□□□□ -1.39
DEF1YKL054C YGR045CP53229 120 aa6.35□□□□□ -1.39
DEF1YKL054C NGL3Q03210 505 aa6.35□□□□□ -1.39
DEF1YKL054C DPB4Q04603 196 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms