RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	MAM1	P40065	302 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	RPT2	P40327	437 aa	Known RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	OYE3	P41816	400 aa	Predicted RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	RSC8	P43609	557 aa	Known RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	ECL1	P48235	211 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	CCM1	P48237	864 aa	Predicted RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	NIT3	P49954	291 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	MDM1	Q01846	1127 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	YDR514C	Q04408	483 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	ATG33	Q06485	197 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	YPL260W	Q08977	551 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	RPL11B	Q3E757	174 aa	Predicted RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	VAS1	P07806	1104 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	ENA1	P13587	1091 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	APA1	P16550	321 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	DBP2	P24783	546 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	DBF20	P32328	564 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	CDC12	P32468	407 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	GCD7	P32502	381 aa	Predicted RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	EMC3	P36039	253 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	MCD4	P36051	919 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	POL12	P38121	705 aa	Predicted RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	KTR4	P38131	464 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	BIT2	P38346	545 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	YHL041W	P38730	149 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	TDA3	P38758	523 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	RPN10	P38886	268 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	GPP2	P40106	250 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	MNN11	P46985	422 aa	Known RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	UBA2	P52488	636 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	YGR045C	P53229	120 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	ELA1	P53861	379 aa	Predicted RBP	4.78	□□□□□ -1.64
PRE9	YGR135W	ENA2	Q01896	1091 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	GUP2	Q08929	609 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	ENA5	Q12691	1091 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	DFG16	Q99234	619 aa		4.78	□□□□□ -1.64
PRE9	YGR135W	PHO81	P17442	1178 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	MBR1	P23493	339 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	NPP1	P25353	742 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	ADP1	P25371	1049 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	DEP1	P31385	405 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	PRO1	P32264	428 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	JNM1	P36224	373 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	MED8	P38304	223 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	QNS1	P38795	714 aa	Known RBP	4.77	□□□□□ -1.65
PRE9	YGR135W	ECM1	P39715	212 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	GPB2	P39717	880 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	CCT5	P40413	562 aa	Known RBP	4.77	□□□□□ -1.65
PRE9	YGR135W	SAP185	P40856	1058 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	SLD3	P53135	668 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	CWC22	P53333	577 aa	Known RBP	4.77	□□□□□ -1.65
PRE9	YGR135W	YML131W	Q03102	365 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	ATP25	Q03153	612 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	BUL2	Q03758	920 aa	Known RBP	4.77	□□□□□ -1.65
PRE9	YGR135W	NHX1	Q04121	633 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	ERP4	Q12450	207 aa		4.77	□□□□□ -1.65
PRE9	YGR135W	RNA1	P11745	407 aa	Known RBP	4.76	□□□□□ -1.65
PRE9	YGR135W	FRS2	P15625	503 aa	Known RBP	4.76	□□□□□ -1.65
PRE9	YGR135W	KIP1	P28742	1111 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	RAD24	P32641	659 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	AFR1	P33304	620 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	LRG1	P35688	1017 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	RIX1	P38883	763 aa	Predicted RBP	4.76	□□□□□ -1.65
PRE9	YGR135W	EMP65	P40085	556 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	IML2	P47031	731 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	TRE1	Q08919	783 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	ENV7	Q12003	364 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	YVC1	Q12324	675 aa		4.76	□□□□□ -1.65
PRE9	YGR135W	SES1	P07284	462 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	RPL19A	P0CX82	189 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	RPL19B	P0CX83	189 aa	Predicted RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	COX11	P19516	300 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	CLB1	P24868	471 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	HEM12	P32347	362 aa	Predicted RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	SEG2	P34250	1132 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	ALY2	P47029	1046 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	PRP43	P53131	767 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	YGL082W	P53155	381 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	ORC3	P54790	616 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	MRS2	Q01926	470 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	EAR1	Q03212	550 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	YHM2	Q04013	314 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	YDR338C	Q05497	695 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	RSA3	Q05942	220 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	REH1	Q06709	432 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	BMS1	Q08965	1183 aa	Known RBP	4.75	□□□□□ -1.65
PRE9	YGR135W	ACM1	Q08981	209 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	YPR027C	Q12079	277 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	RRI2	Q12348	645 aa		4.75	□□□□□ -1.65
PRE9	YGR135W	COQ4	O13525	335 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	PET111	P08468	800 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	RPS24A	P0CX31	135 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	RPS24B	P0CX32	135 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	HCA4	P20448	770 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	MSH1	P25846	959 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	YKU70	P32807	602 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	PRX1	P34227	261 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	RRP8	P38961	392 aa	Known RBP	4.74	□□□□□ -1.65
PRE9	YGR135W	ACA1	P39970	489 aa		4.74	□□□□□ -1.65
PRE9	YGR135W	RET2	P43621	546 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms