RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W TY2B-OR2Q12501 1770 aa3.44□□□□□ -1.86
USE1YGL098W VMR1P38735 1592 aa3.44□□□□□ -1.86
USE1YGL098W RPL6BP05739 176 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W HIS3P06633 220 aa3.44□□□□□ -1.86
USE1YGL098W VMA2P16140 517 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W YAP1P19880 650 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W RPB4P20433 221 aaPredicted RBP3.44□□□□□ -1.86
USE1YGL098W MSM1P22438 575 aa3.44□□□□□ -1.86
USE1YGL098W UBA1P22515 1024 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W CNA1P23287 553 aa3.44□□□□□ -1.86
USE1YGL098W MRPL25P23369 157 aa3.44□□□□□ -1.86
USE1YGL098W TSR4P25040 408 aa3.44□□□□□ -1.86
USE1YGL098W HSP30P25619 332 aa3.44□□□□□ -1.86
USE1YGL098W MVD1P32377 396 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W SAC6P32599 642 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W VMA8P32610 256 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W ARC19P33204 171 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W IFA38P38286 347 aa3.44□□□□□ -1.86
USE1YGL098W HXT6P39003 570 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W HXT7P39004 570 aa3.44□□□□□ -1.86
USE1YGL098W CCT2P39076 527 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W UTP7P40055 554 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W UTP18P40362 594 aaPredicted RBP3.44□□□□□ -1.86
USE1YGL098W EFM4P40516 257 aa3.44□□□□□ -1.86
USE1YGL098W ULP2P40537 1034 aaPredicted RBP3.44□□□□□ -1.86
USE1YGL098W POL31P46957 487 aa3.44□□□□□ -1.86
USE1YGL098W JJJ2P46997 583 aa3.44□□□□□ -1.86
USE1YGL098W YJR039WP47107 1121 aa3.44□□□□□ -1.86
USE1YGL098W HAM1P47119 197 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W ECL1P48235 211 aa3.44□□□□□ -1.86
USE1YGL098W RIM21P48565 533 aa3.44□□□□□ -1.86
USE1YGL098W VMA10P48836 114 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W GCV2P49095 1034 aa3.44□□□□□ -1.86
USE1YGL098W IPI3P53877 555 aa3.44□□□□□ -1.86
USE1YGL098W ESBP6P53918 673 aa3.44□□□□□ -1.86
USE1YGL098W NAF1P53919 492 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W ERG5P54781 538 aa3.44□□□□□ -1.86
USE1YGL098W ATP25Q03153 612 aa3.44□□□□□ -1.86
USE1YGL098W PPM1Q04081 328 aa3.44□□□□□ -1.86
USE1YGL098W VTI1Q04338 217 aa3.44□□□□□ -1.86
USE1YGL098W RSC2Q06488 889 aa3.44□□□□□ -1.86
USE1YGL098W MCP2Q06567 569 aa3.44□□□□□ -1.86
USE1YGL098W CSR1Q06705 408 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W NSE1Q07913 336 aa3.44□□□□□ -1.86
USE1YGL098W RTT10Q08924 1013 aa3.44□□□□□ -1.86
USE1YGL098W UIP4Q08926 304 aa3.44□□□□□ -1.86
USE1YGL098W YIG1Q08956 461 aa3.44□□□□□ -1.86
USE1YGL098W BBP1Q12365 385 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-BQ12491 1770 aa3.43□□□□□ -1.86
USE1YGL098W ARG4P04076 463 aaPredicted RBP3.43□□□□□ -1.86
USE1YGL098W HXK1P04806 485 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W CMD1P06787 147 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W PIF1P07271 859 aa3.43□□□□□ -1.86
USE1YGL098W DAT1P13483 248 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W MSS116P15424 664 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W THR1P17423 357 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W PHO84P25297 587 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W RAD57P25301 460 aa3.43□□□□□ -1.86
USE1YGL098W YCR051WP25631 222 aa3.43□□□□□ -1.86
USE1YGL098W MSH2P25847 964 aa3.43□□□□□ -1.86
USE1YGL098W SEC65P29478 273 aa3.43□□□□□ -1.86
USE1YGL098W AFG2P32794 780 aa3.43□□□□□ -1.86
USE1YGL098W YKL222CP35995 705 aa3.43□□□□□ -1.86
USE1YGL098W OCT1P35999 772 aa3.43□□□□□ -1.86
USE1YGL098W PXL1P36166 706 aa3.43□□□□□ -1.86
USE1YGL098W VMA22P38784 181 aa3.43□□□□□ -1.86
USE1YGL098W CTM1P38818 585 aa3.43□□□□□ -1.86
USE1YGL098W MPT5P39016 859 aaKnown RBP RIP-Chip data3.43□□□□□ -1.86not detected
USE1YGL098W UBP12P39538 1254 aa3.43□□□□□ -1.86
USE1YGL098W CAB2P40506 365 aa3.43□□□□□ -1.86
USE1YGL098W SNL1P40548 159 aa3.43□□□□□ -1.86
USE1YGL098W MKT1P40850 830 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W TY4A-JP47023 414 aa3.43□□□□□ -1.86
USE1YGL098W MDV1P47025 714 aa3.43□□□□□ -1.86
USE1YGL098W YJR054WP47114 497 aa3.43□□□□□ -1.86
USE1YGL098W KEL2P50090 882 aa3.43□□□□□ -1.86
USE1YGL098W DSD1P53095 428 aa3.43□□□□□ -1.86
USE1YGL098W MPS2P53159 387 aa3.43□□□□□ -1.86
USE1YGL098W YGR054WP53235 642 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W DIP5P53388 608 aa3.43□□□□□ -1.86
USE1YGL098W DCP2P53550 970 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W ADE16P54113 591 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W PTA1Q01329 785 aaPredicted RBP3.43□□□□□ -1.86
USE1YGL098W NOG1Q02892 647 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W MMT1Q03218 510 aa3.43□□□□□ -1.86
USE1YGL098W USA1Q03714 838 aa3.43□□□□□ -1.86
USE1YGL098W SYF1Q04048 859 aaPredicted RBP3.43□□□□□ -1.86
USE1YGL098W SVF1Q05515 481 aa3.43□□□□□ -1.86
USE1YGL098W HEL2Q05580 639 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W DON1Q05610 365 aa3.43□□□□□ -1.86
USE1YGL098W MRX10Q05648 414 aa3.43□□□□□ -1.86
USE1YGL098W PIG1Q06216 648 aa3.43□□□□□ -1.86
USE1YGL098W HIM1Q06674 414 aa3.43□□□□□ -1.86
USE1YGL098W MCM21Q06675 368 aa3.43□□□□□ -1.86
USE1YGL098W SMC5Q08204 1093 aa3.43□□□□□ -1.86
USE1YGL098W APC5Q08683 685 aa3.43□□□□□ -1.86
USE1YGL098W CBC2Q08920 208 aaKnown RBP RIP-Chip data3.43□□□□□ -1.86not detected
USE1YGL098W RRP6Q12149 733 aaKnown RBP3.43□□□□□ -1.86
USE1YGL098W TIP41Q12199 356 aa3.43□□□□□ -1.86
USE1YGL098W NCA2Q12374 616 aa3.43□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 96.4 ms