RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C YVC1Q12324 675 aa5.14□□□□□ -1.59
NPL4YBR170C Q0142Q9ZZW4 58 aa5.14□□□□□ -1.59
NPL4YBR170C MPE1P35728 441 aaKnown RBP5.14□□□□□ -1.59
NPL4YBR170C MNN4P36044 1178 aa5.14□□□□□ -1.59
NPL4YBR170C OYE3P41816 400 aaPredicted RBP5.14□□□□□ -1.59
NPL4YBR170C BNA2P47125 453 aa5.14□□□□□ -1.59
NPL4YBR170C YKR011CQ02209 353 aa5.14□□□□□ -1.59
NPL4YBR170C ENT2Q05785 613 aa5.14□□□□□ -1.59
NPL4YBR170C RSB1Q08417 382 aa5.14□□□□□ -1.59
NPL4YBR170C YLR149CQ99296 730 aa5.14□□□□□ -1.59
NPL4YBR170C RPS9AO13516 197 aaKnown RBP5.13□□□□□ -1.59
NPL4YBR170C HCA4P20448 770 aaKnown RBP5.13□□□□□ -1.59
NPL4YBR170C SEC65P29478 273 aa5.13□□□□□ -1.59
NPL4YBR170C STE13P33894 931 aa5.13□□□□□ -1.59
NPL4YBR170C THI80P35202 319 aa5.13□□□□□ -1.59
NPL4YBR170C YKR018CP36114 725 aa5.13□□□□□ -1.59
NPL4YBR170C YFL052WP43551 465 aa5.13□□□□□ -1.59
NPL4YBR170C RSC58Q07979 502 aa5.13□□□□□ -1.59
NPL4YBR170C THI21Q08975 551 aa5.13□□□□□ -1.59
NPL4YBR170C NOP56Q12460 504 aaKnown RBP RIP-Chip data5.13□□□□□ -1.59not detected
NPL4YBR170C PRC1P00729 532 aa5.12□□□□□ -1.59
NPL4YBR170C ATP12P22135 325 aa5.12□□□□□ -1.59
NPL4YBR170C MDL2P33311 773 aa5.12□□□□□ -1.59
NPL4YBR170C MAL31P38156 614 aa5.12□□□□□ -1.59
NPL4YBR170C RPT2P40327 437 aaKnown RBP5.12□□□□□ -1.59
NPL4YBR170C CEG1Q01159 459 aaPredicted RBP5.12□□□□□ -1.59
NPL4YBR170C MAP1Q01662 387 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
NPL4YBR170C YOR022CQ12204 715 aa5.12□□□□□ -1.59
NPL4YBR170C YOL114CQ12322 202 aa5.12□□□□□ -1.59
NPL4YBR170C RRI2Q12348 645 aa5.12□□□□□ -1.59
NPL4YBR170C PHO81P17442 1178 aa5.11□□□□□ -1.59
NPL4YBR170C PRP6P19735 899 aaPredicted RBP5.11□□□□□ -1.59
NPL4YBR170C TYE7P33122 291 aaPredicted RBP5.11□□□□□ -1.59
NPL4YBR170C RNR4P49723 345 aaKnown RBP5.11□□□□□ -1.59
NPL4YBR170C RAI1P53063 387 aaKnown RBP5.11□□□□□ -1.59
NPL4YBR170C HAL9Q12180 1030 aa5.11□□□□□ -1.59
NPL4YBR170C RPD3P32561 433 aa5.11□□□□□ -1.59
NPL4YBR170C FLR1P38124 548 aa5.11□□□□□ -1.59
NPL4YBR170C AIM21P40563 679 aa5.11□□□□□ -1.59
NPL4YBR170C ZIP2P53061 704 aa5.11□□□□□ -1.59
NPL4YBR170C PCL10P53124 433 aa5.11□□□□□ -1.59
NPL4YBR170C ORC3P54790 616 aa5.11□□□□□ -1.59
NPL4YBR170C SSP2Q08646 371 aa5.11□□□□□ -1.59
NPL4YBR170C YPL277CQ08989 487 aa5.11□□□□□ -1.59
NPL4YBR170C SWI6P09959 803 aa5.1□□□□□ -1.59
NPL4YBR170C HOP1P20050 605 aa5.1□□□□□ -1.59
NPL4YBR170C MFT1P33441 392 aaKnown RBP5.1□□□□□ -1.59
NPL4YBR170C ERR3P42222 437 aa5.1□□□□□ -1.59
NPL4YBR170C YJR039WP47107 1121 aa5.1□□□□□ -1.59
NPL4YBR170C ARP4P80428 489 aa5.1□□□□□ -1.59
NPL4YBR170C VPS30Q02948 557 aa5.1□□□□□ -1.59
NPL4YBR170C PET309P32522 965 aaPredicted RBP5.09□□□□□ -1.59
NPL4YBR170C SSZ1P38788 538 aaKnown RBP5.09□□□□□ -1.59
NPL4YBR170C GIR2Q03768 265 aaPredicted RBP5.09□□□□□ -1.59
NPL4YBR170C CIA1Q05583 330 aa5.09□□□□□ -1.59
NPL4YBR170C OMS1Q06668 471 aa5.09□□□□□ -1.59
NPL4YBR170C SEC18P18759 758 aaKnown RBP5.09□□□□□ -1.6
NPL4YBR170C MSM1P22438 575 aa5.09□□□□□ -1.6
NPL4YBR170C POA1P38218 177 aa5.09□□□□□ -1.6
NPL4YBR170C RFC5P38251 354 aa5.09□□□□□ -1.6
NPL4YBR170C ASK10P48361 1146 aa5.09□□□□□ -1.6
NPL4YBR170C UBA2P52488 636 aa5.09□□□□□ -1.6
NPL4YBR170C PUS2P53167 370 aa5.09□□□□□ -1.6
NPL4YBR170C HOL1P53389 586 aa5.09□□□□□ -1.6
NPL4YBR170C ESF2P53743 316 aaKnown RBP5.09□□□□□ -1.6
NPL4YBR170C MOT3P54785 490 aaKnown RBP5.09□□□□□ -1.6
NPL4YBR170C TRS130Q03660 1102 aa5.09□□□□□ -1.6
NPL4YBR170C TRE1Q08919 783 aa5.09□□□□□ -1.6
NPL4YBR170C YOL087CQ99247 1116 aa5.09□□□□□ -1.6
NPL4YBR170C HSC82P15108 705 aaKnown RBP5.08□□□□□ -1.6
NPL4YBR170C GFD2P25370 566 aaKnown RBP5.08□□□□□ -1.6
NPL4YBR170C SRP101P32916 621 aa5.08□□□□□ -1.6
NPL4YBR170C ABZ1P37254 787 aaPredicted RBP5.08□□□□□ -1.6
NPL4YBR170C BFA1P47113 574 aa5.08□□□□□ -1.6
NPL4YBR170C DUS1P53759 423 aaKnown RBP5.08□□□□□ -1.6
NPL4YBR170C TEP1P53916 434 aa5.08□□□□□ -1.6
NPL4YBR170C SSY1Q03770 852 aa5.08□□□□□ -1.6
NPL4YBR170C HLR1Q04429 423 aa5.08□□□□□ -1.6
NPL4YBR170C SSL1Q04673 461 aaPredicted RBP5.08□□□□□ -1.6
NPL4YBR170C URN1Q06525 465 aaKnown RBP5.08□□□□□ -1.6
NPL4YBR170C HIM1Q06674 414 aa5.08□□□□□ -1.6
NPL4YBR170C NUR1Q12066 484 aa5.08□□□□□ -1.6
NPL4YBR170C GLN4P13188 809 aaKnown RBP5.07□□□□□ -1.6
NPL4YBR170C MCM10P32354 571 aa5.07□□□□□ -1.6
NPL4YBR170C BEM3P32873 1128 aa5.07□□□□□ -1.6
NPL4YBR170C BEM4P39011 633 aa5.07□□□□□ -1.6
NPL4YBR170C YIL108WP40483 696 aaKnown RBP5.07□□□□□ -1.6
NPL4YBR170C YIL092WP40497 633 aa5.07□□□□□ -1.6
NPL4YBR170C IML2P47031 731 aa5.07□□□□□ -1.6
NPL4YBR170C BRE5P53741 515 aaKnown RBP5.07□□□□□ -1.6
NPL4YBR170C MDG1P53885 366 aa5.07□□□□□ -1.6
NPL4YBR170C GTR1Q00582 310 aa5.07□□□□□ -1.6
NPL4YBR170C MDM1Q01846 1127 aa5.07□□□□□ -1.6
NPL4YBR170C NEW1Q08972 1196 aaKnown RBP5.07□□□□□ -1.6
NPL4YBR170C RIB2Q12362 591 aaKnown RBP5.07□□□□□ -1.6
NPL4YBR170C FBP1P09201 348 aa5.06□□□□□ -1.6
NPL4YBR170C CDC26P14724 124 aa5.06□□□□□ -1.6
NPL4YBR170C MSH1P25846 959 aa5.06□□□□□ -1.6
NPL4YBR170C PEX7P39108 375 aa5.06□□□□□ -1.6
NPL4YBR170C VID28P40547 921 aa5.06□□□□□ -1.6
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms