RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C COT1P32798 439 aa5.32□□□□□ -1.56
NUP116YMR047C JJJ1P53863 590 aa5.32□□□□□ -1.56
NUP116YMR047C SYH1Q02875 849 aaKnown RBP5.32□□□□□ -1.56
NUP116YMR047C NOP14Q99207 810 aaKnown RBP5.32□□□□□ -1.56
NUP116YMR047C YHR202WP38887 602 aa5.31□□□□□ -1.56
NUP116YMR047C HYR1P40581 163 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C SGM1P47166 707 aa5.31□□□□□ -1.56
NUP116YMR047C YMR102CQ03177 834 aa5.31□□□□□ -1.56
NUP116YMR047C YPR172WQ06608 200 aa5.31□□□□□ -1.56
NUP116YMR047C SDH5Q08230 162 aa5.31□□□□□ -1.56
NUP116YMR047C PGA3Q12746 312 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C PCK1P10963 549 aa5.31□□□□□ -1.56
NUP116YMR047C BMH1P29311 267 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C MPE1P35728 441 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C MRX3P38172 270 aa5.31□□□□□ -1.56
NUP116YMR047C YFL052WP43551 465 aa5.31□□□□□ -1.56
NUP116YMR047C SLK19Q08581 821 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C GLN3P18494 730 aa5.31□□□□□ -1.56
NUP116YMR047C CYS3P31373 394 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C DPH5P32469 300 aaPredicted RBP5.31□□□□□ -1.56
NUP116YMR047C BRE2P43132 505 aa5.31□□□□□ -1.56
NUP116YMR047C CUE3P53137 624 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C VTC3Q02725 835 aa5.31□□□□□ -1.56
NUP116YMR047C RSC2Q06488 889 aa5.31□□□□□ -1.56
NUP116YMR047C PUS1Q12211 544 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C LSP1Q12230 341 aaKnown RBP5.31□□□□□ -1.56
NUP116YMR047C LAA1P39526 2014 aa5.31□□□□□ -1.56
NUP116YMR047C VPH1P32563 840 aaKnown RBP5.3□□□□□ -1.56
NUP116YMR047C HMT1P38074 348 aa5.3□□□□□ -1.56
NUP116YMR047C OLA1P38219 394 aaKnown RBP5.3□□□□□ -1.56
NUP116YMR047C GDT1P38301 280 aaPredicted RBP5.3□□□□□ -1.56
NUP116YMR047C YEL023CP39992 682 aa5.3□□□□□ -1.56
NUP116YMR047C ESL1P40456 1118 aa5.3□□□□□ -1.56
NUP116YMR047C YGL140CP53120 1219 aa5.3□□□□□ -1.56
NUP116YMR047C CRD1Q07560 283 aa5.3□□□□□ -1.56
NUP116YMR047C YOR296WQ08748 1289 aa5.3□□□□□ -1.56
NUP116YMR047C CIR2Q08822 631 aa5.3□□□□□ -1.56
NUP116YMR047C YMR084WA2P2R3 262 aa5.3□□□□□ -1.56
NUP116YMR047C HCA4P20448 770 aaKnown RBP5.3□□□□□ -1.56
NUP116YMR047C NPR3P38742 1146 aa5.3□□□□□ -1.56
NUP116YMR047C CIT3P43635 486 aa5.3□□□□□ -1.56
NUP116YMR047C ARP5P53946 755 aa5.3□□□□□ -1.56
NUP116YMR047C ATG26Q06321 1198 aa5.3□□□□□ -1.56
NUP116YMR047C SWI3P32591 825 aa5.3□□□□□ -1.56
NUP116YMR047C YHL026CP38740 315 aa5.3□□□□□ -1.56
NUP116YMR047C MRN1Q08925 612 aaKnown RBP RIP-Chip data5.3□□□□□ -1.56not detected
NUP116YMR047C STI1P15705 589 aaKnown RBP RIP-Chip data5.29□□□□□ -1.56not detected
NUP116YMR047C YLF2P38746 405 aa5.29□□□□□ -1.56
NUP116YMR047C HST2P53686 357 aa5.29□□□□□ -1.56
NUP116YMR047C YNL035CP53962 389 aaKnown RBP5.29□□□□□ -1.56
NUP116YMR047C VPS20Q04272 221 aa5.29□□□□□ -1.56
NUP116YMR047C YPR097WQ06839 1073 aa5.29□□□□□ -1.56
NUP116YMR047C CDC53Q12018 815 aaKnown RBP5.29□□□□□ -1.56
NUP116YMR047C DCS2Q12123 353 aa5.29□□□□□ -1.56
NUP116YMR047C DED1P06634 604 aaKnown RBP5.29□□□□□ -1.56
NUP116YMR047C ATP1P07251 545 aaKnown RBP5.29□□□□□ -1.56
NUP116YMR047C KTR2P33550 425 aa5.29□□□□□ -1.56
NUP116YMR047C KDX1P36005 433 aa5.29□□□□□ -1.56
NUP116YMR047C EFM2P38347 419 aa5.29□□□□□ -1.56
NUP116YMR047C DOT1Q04089 582 aaKnown RBP5.29□□□□□ -1.56
NUP116YMR047C YDR338CQ05497 695 aa5.29□□□□□ -1.56
NUP116YMR047C HXK1P04806 485 aaKnown RBP5.28□□□□□ -1.56
NUP116YMR047C WHI2P12611 486 aa5.28□□□□□ -1.56
NUP116YMR047C KAR3P17119 729 aa5.28□□□□□ -1.56
NUP116YMR047C YSC83P32792 385 aa5.28□□□□□ -1.56
NUP116YMR047C APN2P38207 520 aa5.28□□□□□ -1.56
NUP116YMR047C RKM3P38222 552 aa5.28□□□□□ -1.56
NUP116YMR047C UBX7P38349 436 aa5.28□□□□□ -1.56
NUP116YMR047C GCV2P49095 1034 aa5.28□□□□□ -1.56
NUP116YMR047C INP52P50942 1183 aa5.28□□□□□ -1.56
NUP116YMR047C HOS2P53096 452 aaPredicted RBP5.28□□□□□ -1.56
NUP116YMR047C LSO1Q3E827 93 aa5.28□□□□□ -1.56
NUP116YMR047C CDC6P09119 513 aa5.28□□□□□ -1.56
NUP116YMR047C BUD6P41697 788 aa5.28□□□□□ -1.56
NUP116YMR047C MAP1Q01662 387 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
NUP116YMR047C MUK1Q02866 612 aa5.28□□□□□ -1.56
NUP116YMR047C SPO71Q03868 1245 aa5.28□□□□□ -1.56
NUP116YMR047C MAG2Q06436 670 aaKnown RBP5.28□□□□□ -1.56
NUP116YMR047C APC2Q12440 853 aa5.28□□□□□ -1.56
NUP116YMR047C SMC6Q12749 1114 aa5.28□□□□□ -1.56
NUP116YMR047C MBR1P23493 339 aa5.28□□□□□ -1.56
NUP116YMR047C PXR1P53335 271 aaPredicted RBP5.28□□□□□ -1.56
NUP116YMR047C IES4Q08561 116 aa5.28□□□□□ -1.56
NUP116YMR047C RPL19AP0CX82 189 aaKnown RBP5.27□□□□□ -1.57
NUP116YMR047C RPL19BP0CX83 189 aaPredicted RBP5.27□□□□□ -1.57
NUP116YMR047C RPC53P25441 422 aa5.27□□□□□ -1.57
NUP116YMR047C SKG6P32900 734 aaPredicted RBP5.27□□□□□ -1.57
NUP116YMR047C YEL1P34225 687 aa5.27□□□□□ -1.57
NUP116YMR047C VID28P40547 921 aa5.27□□□□□ -1.57
NUP116YMR047C VMS1Q04311 632 aaKnown RBP5.27□□□□□ -1.57
NUP116YMR047C RKM4Q12504 494 aa5.27□□□□□ -1.57
NUP116YMR047C PTC5Q12511 572 aa5.27□□□□□ -1.57
NUP116YMR047C HAP2P06774 265 aa5.27□□□□□ -1.57
NUP116YMR047C PEP7P32609 515 aa5.27□□□□□ -1.57
NUP116YMR047C VTC2P43585 828 aa5.27□□□□□ -1.57
NUP116YMR047C CTR1P49573 406 aa5.27□□□□□ -1.57
NUP116YMR047C NCS2P53923 493 aaPredicted RBP5.27□□□□□ -1.57
NUP116YMR047C SPO19Q03029 223 aa5.27□□□□□ -1.57
NUP116YMR047C VPS60Q03390 229 aa5.27□□□□□ -1.57
NUP116YMR047C ARO80Q04052 950 aa5.27□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms