RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W DUS3Q06053 668 aaKnown RBP4.53□□□□□ -1.68
UPF3YGR072W PPG1P32838 368 aa4.52□□□□□ -1.69
UPF3YGR072W TSL1P38427 1098 aaKnown RBP4.52□□□□□ -1.69
UPF3YGR072W NSE3Q05541 303 aa4.52□□□□□ -1.69
UPF3YGR072W CDC53Q12018 815 aaKnown RBP4.52□□□□□ -1.69
UPF3YGR072W GRX1P25373 110 aaKnown RBP4.51□□□□□ -1.69
UPF3YGR072W SBA1P28707 216 aaKnown RBP4.51□□□□□ -1.69
UPF3YGR072W YKR078WP36158 585 aaKnown RBP4.51□□□□□ -1.69
UPF3YGR072W ERG5P54781 538 aa4.51□□□□□ -1.69
UPF3YGR072W TDA5Q06417 326 aaKnown RBP4.51□□□□□ -1.69
UPF3YGR072W FAL1Q12099 399 aaKnown RBP4.51□□□□□ -1.69
UPF3YGR072W MSL5Q12186 476 aaKnown RBP RIP-Chip data4.51□□□□□ -1.69not detected
UPF3YGR072W NOT3P06102 836 aaKnown RBP4.5□□□□□ -1.69
UPF3YGR072W MDM10P18409 493 aa4.5□□□□□ -1.69
UPF3YGR072W SDS3P40505 327 aa4.5□□□□□ -1.69
UPF3YGR072W RNH70P53331 553 aa4.5□□□□□ -1.69
UPF3YGR072W NAN1Q02931 896 aaKnown RBP4.5□□□□□ -1.69
UPF3YGR072W OPI10Q08202 246 aa4.5□□□□□ -1.69
UPF3YGR072W AGP1P25376 633 aa4.49□□□□□ -1.69
UPF3YGR072W CDC48P25694 835 aaKnown RBP4.49□□□□□ -1.69
UPF3YGR072W RRP14P36080 434 aaKnown RBP4.49□□□□□ -1.69
UPF3YGR072W GUS1P46655 708 aaKnown RBP RIP-Chip data4.49□□□□□ -1.69not detected
UPF3YGR072W YKE2P52553 114 aa4.49□□□□□ -1.69
UPF3YGR072W RPN4Q03465 531 aa4.49□□□□□ -1.69
UPF3YGR072W SSL1Q04673 461 aaPredicted RBP4.49□□□□□ -1.69
UPF3YGR072W AFT2Q08957 416 aa4.49□□□□□ -1.69
UPF3YGR072W SUT2Q12286 268 aa4.49□□□□□ -1.69
UPF3YGR072W PRI2P20457 528 aa4.48□□□□□ -1.69
UPF3YGR072W SEC21P32074 935 aaKnown RBP4.48□□□□□ -1.69
UPF3YGR072W YBR238CP38330 731 aaKnown RBP4.48□□□□□ -1.69
UPF3YGR072W PEX19Q07418 342 aa4.48□□□□□ -1.69
UPF3YGR072W SPO75Q07798 868 aa4.48□□□□□ -1.69
UPF3YGR072W MRH1Q12117 320 aaPredicted RBP4.48□□□□□ -1.69
UPF3YGR072W BNR1P40450 1375 aa4.48□□□□□ -1.69
UPF3YGR072W NPP1P25353 742 aa4.47□□□□□ -1.69
UPF3YGR072W SCT1P32784 759 aa4.47□□□□□ -1.69
UPF3YGR072W STE13P33894 931 aa4.47□□□□□ -1.69
UPF3YGR072W FPR3P38911 411 aaKnown RBP4.47□□□□□ -1.69
UPF3YGR072W SPF1P39986 1215 aaKnown RBP4.47□□□□□ -1.69
UPF3YGR072W FBP1P09201 348 aa4.46□□□□□ -1.7
UPF3YGR072W RAD4P14736 754 aa4.46□□□□□ -1.7
UPF3YGR072W PPH3P32345 308 aa4.46□□□□□ -1.7
UPF3YGR072W TIM54P47045 478 aa4.46□□□□□ -1.7
UPF3YGR072W YDR306CQ06640 478 aa4.46□□□□□ -1.7
UPF3YGR072W HBT1Q07653 1046 aaKnown RBP4.46□□□□□ -1.7
UPF3YGR072W OSH2Q12451 1283 aa4.46□□□□□ -1.7
UPF3YGR072W CIT2P08679 460 aa4.45□□□□□ -1.7
UPF3YGR072W AFR1P33304 620 aa4.45□□□□□ -1.7
UPF3YGR072W CTF13P35203 478 aa4.45□□□□□ -1.7
UPF3YGR072W MRP8P35719 219 aa4.45□□□□□ -1.7
UPF3YGR072W VBA5P36172 582 aa4.45□□□□□ -1.7
UPF3YGR072W PPS1P38148 807 aa4.45□□□□□ -1.7
UPF3YGR072W CHZ1P40019 153 aaPredicted RBP4.45□□□□□ -1.7
UPF3YGR072W SDP1P40479 209 aa4.45□□□□□ -1.7
UPF3YGR072W HUL5P53119 910 aa4.45□□□□□ -1.7
UPF3YGR072W FRE5Q08908 694 aa4.45□□□□□ -1.7
UPF3YGR072W PPZ2P33329 710 aa4.44□□□□□ -1.7
UPF3YGR072W PBP2P38151 413 aaKnown RBP RIP-Chip data4.44□□□□□ -1.7not detected
UPF3YGR072W VPS30Q02948 557 aa4.44□□□□□ -1.7
UPF3YGR072W SHE9Q04172 456 aa4.44□□□□□ -1.7
UPF3YGR072W YAP7Q08182 245 aa4.44□□□□□ -1.7
UPF3YGR072W MET3P08536 511 aa4.43□□□□□ -1.7
UPF3YGR072W RPD3P32561 433 aa4.43□□□□□ -1.7
UPF3YGR072W TDP1P38319 544 aa4.43□□□□□ -1.7
UPF3YGR072W GGA2P38817 585 aaKnown RBP4.43□□□□□ -1.7
UPF3YGR072W IRR1P40541 1150 aa4.43□□□□□ -1.7
UPF3YGR072W BUD6P41697 788 aa4.43□□□□□ -1.7
UPF3YGR072W IMO32P53219 342 aa4.43□□□□□ -1.7
UPF3YGR072W ALG12P53730 551 aa4.43□□□□□ -1.7
UPF3YGR072W HOF1Q05080 669 aa4.43□□□□□ -1.7
UPF3YGR072W ICT1Q12385 394 aa4.43□□□□□ -1.7
UPF3YGR072W TRM11Q12463 433 aa4.43□□□□□ -1.7
UPF3YGR072W ADE8P04161 214 aa4.42□□□□□ -1.7
UPF3YGR072W MET6P05694 767 aaKnown RBP4.42□□□□□ -1.7
UPF3YGR072W TUB3P09734 445 aaKnown RBP4.42□□□□□ -1.7
UPF3YGR072W CTF8P38877 133 aa4.42□□□□□ -1.7
UPF3YGR072W RIX1P38883 763 aaPredicted RBP4.42□□□□□ -1.7
UPF3YGR072W ELO3P40319 345 aa4.42□□□□□ -1.7
UPF3YGR072W YIL108WP40483 696 aaKnown RBP4.42□□□□□ -1.7
UPF3YGR072W YGR125WP53273 1036 aa4.42□□□□□ -1.7
UPF3YGR072W DLT1Q04216 342 aa4.42□□□□□ -1.7
UPF3YGR072W UTP14Q04500 899 aaKnown RBP4.42□□□□□ -1.7
UPF3YGR072W GAL11P19659 1081 aa4.41□□□□□ -1.7
UPF3YGR072W HSP60P19882 572 aaKnown RBP4.41□□□□□ -1.7
UPF3YGR072W AAR2P32357 355 aaPredicted RBP4.41□□□□□ -1.7
UPF3YGR072W YKL069WP36088 180 aa4.41□□□□□ -1.7
UPF3YGR072W PBY1P38254 753 aa4.41□□□□□ -1.7
UPF3YGR072W YBR184WP38299 523 aa4.41□□□□□ -1.7
UPF3YGR072W YHL017WP38745 532 aa4.41□□□□□ -1.7
UPF3YGR072W SIT1P39980 628 aa4.41□□□□□ -1.7
UPF3YGR072W DAS1P47005 663 aa4.41□□□□□ -1.7
UPF3YGR072W ERP6P53198 216 aa4.41□□□□□ -1.7
UPF3YGR072W POB3Q04636 552 aaKnown RBP4.41□□□□□ -1.7
UPF3YGR072W COQ11Q05892 277 aa4.41□□□□□ -1.7
UPF3YGR072W FLC1Q08967 793 aa4.41□□□□□ -1.7
UPF3YGR072W YLR125WQ12138 136 aa4.41□□□□□ -1.7
UPF3YGR072W SWM1Q12379 170 aa4.41□□□□□ -1.7
UPF3YGR072W FLO10P36170 1169 aa4.4□□□□□ -1.71
UPF3YGR072W YRO2P38079 344 aa4.4□□□□□ -1.71
UPF3YGR072W NUP82P40368 713 aa4.4□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms