RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W MET13P53128 600 aa6.65□□□□□ -1.34
RPN11YFR004W LSB1P53281 241 aa6.65□□□□□ -1.34
RPN11YFR004W SKY1Q03656 742 aa6.65□□□□□ -1.34
RPN11YFR004W PTC5Q12511 572 aa6.65□□□□□ -1.34
RPN11YFR004W NBL1Q3E7Y6 73 aa6.65□□□□□ -1.34
RPN11YFR004W MET6P05694 767 aaKnown RBP6.64□□□□□ -1.35
RPN11YFR004W PET123P17558 318 aa6.64□□□□□ -1.35
RPN11YFR004W RRP43P25359 394 aaPredicted RBP6.64□□□□□ -1.35
RPN11YFR004W FUB1P25659 250 aa6.64□□□□□ -1.35
RPN11YFR004W SYN8P31377 255 aa6.64□□□□□ -1.35
RPN11YFR004W SPT16P32558 1035 aaKnown RBP6.64□□□□□ -1.35
RPN11YFR004W PCH2P38126 564 aa6.64□□□□□ -1.35
RPN11YFR004W STB5P38699 743 aa6.64□□□□□ -1.35
RPN11YFR004W NDT80P38830 627 aa6.64□□□□□ -1.35
RPN11YFR004W CEP3P40969 608 aa6.64□□□□□ -1.35
RPN11YFR004W FMS1P50264 508 aa6.64□□□□□ -1.35
RPN11YFR004W CUE3P53137 624 aaKnown RBP6.64□□□□□ -1.35
RPN11YFR004W VPS75P53853 264 aa6.64□□□□□ -1.35
RPN11YFR004W RPT6Q01939 405 aaKnown RBP6.64□□□□□ -1.35
RPN11YFR004W GDE1Q02979 1223 aa6.64□□□□□ -1.35
RPN11YFR004W HEH2Q03281 663 aa6.64□□□□□ -1.35
RPN11YFR004W GIS4Q04233 774 aa6.64□□□□□ -1.35
RPN11YFR004W EIS1Q05050 843 aaKnown RBP6.64□□□□□ -1.35
RPN11YFR004W YPR084WQ06821 456 aa6.64□□□□□ -1.35
RPN11YFR004W PSR2Q07949 397 aa6.64□□□□□ -1.35
RPN11YFR004W SRP54P20424 541 aaKnown RBP6.63□□□□□ -1.35
RPN11YFR004W RNR3P21672 869 aaKnown RBP6.63□□□□□ -1.35
RPN11YFR004W MAK31P23059 88 aa6.63□□□□□ -1.35
RPN11YFR004W KIN82P25341 720 aa6.63□□□□□ -1.35
RPN11YFR004W PAT1P25644 796 aaKnown RBP6.63□□□□□ -1.35
RPN11YFR004W MRF1P30775 413 aaPredicted RBP6.63□□□□□ -1.35
RPN11YFR004W UGA4P32837 571 aa6.63□□□□□ -1.35
RPN11YFR004W RTT107P38850 1070 aa6.63□□□□□ -1.35
RPN11YFR004W ROM1P53046 1155 aa6.63□□□□□ -1.35
RPN11YFR004W HCR1Q05775 265 aaKnown RBP6.63□□□□□ -1.35
RPN11YFR004W FRA1Q07825 749 aa6.63□□□□□ -1.35
RPN11YFR004W YLL058WQ12198 575 aa6.63□□□□□ -1.35
RPN11YFR004W STB3Q12427 513 aa6.63□□□□□ -1.35
RPN11YFR004W MSH3P25336 1018 aa6.62□□□□□ -1.35
RPN11YFR004W BMH1P29311 267 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W SEC65P29478 273 aa6.62□□□□□ -1.35
RPN11YFR004W ADE17P38009 592 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W ACS2P52910 683 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W LSC2P53312 427 aa6.62□□□□□ -1.35
RPN11YFR004W FAR11P53917 953 aa6.62□□□□□ -1.35
RPN11YFR004W AGE1Q04412 482 aa6.62□□□□□ -1.35
RPN11YFR004W MYO5Q04439 1219 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W GFD1Q04839 188 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W YDR341CQ05506 607 aaKnown RBP6.62□□□□□ -1.35
RPN11YFR004W SVF1Q05515 481 aa6.62□□□□□ -1.35
RPN11YFR004W MMR1Q06324 491 aa6.62□□□□□ -1.35
RPN11YFR004W YCG1Q06680 1035 aa6.62□□□□□ -1.35
RPN11YFR004W HIS4P00815 799 aaKnown RBP6.61□□□□□ -1.35
RPN11YFR004W CIT1P00890 479 aa6.61□□□□□ -1.35
RPN11YFR004W CDC37P06101 506 aaKnown RBP6.61□□□□□ -1.35
RPN11YFR004W MSD1P15179 658 aaKnown RBP6.61□□□□□ -1.35
RPN11YFR004W STI1P15705 589 aaKnown RBP RIP-Chip data6.61□□□□□ -1.35not detected
RPN11YFR004W SMY2P32909 740 aaKnown RBP6.61□□□□□ -1.35
RPN11YFR004W LTV1P34078 463 aa6.61□□□□□ -1.35
RPN11YFR004W TCD1P38756 429 aa6.61□□□□□ -1.35
RPN11YFR004W SPT8P38915 602 aa6.61□□□□□ -1.35
RPN11YFR004W RRN7P40992 514 aa6.61□□□□□ -1.35
RPN11YFR004W FIG4P42837 879 aa6.61□□□□□ -1.35
RPN11YFR004W PRP31P49704 494 aaPredicted RBP6.61□□□□□ -1.35
RPN11YFR004W ART5P53244 586 aaKnown RBP6.61□□□□□ -1.35
RPN11YFR004W CUS1Q02554 436 aaPredicted RBP6.61□□□□□ -1.35
RPN11YFR004W PNP1Q05788 311 aa6.61□□□□□ -1.35
RPN11YFR004W COG4Q06096 861 aa6.61□□□□□ -1.35
RPN11YFR004W NUT2Q06213 157 aa6.61□□□□□ -1.35
RPN11YFR004W YOR296WQ08748 1289 aa6.61□□□□□ -1.35
RPN11YFR004W HAP4P14064 554 aa6.6□□□□□ -1.35
RPN11YFR004W SEC2P17065 759 aa6.6□□□□□ -1.35
RPN11YFR004W PHO13P19881 312 aa6.6□□□□□ -1.35
RPN11YFR004W SPC110P32380 944 aa6.6□□□□□ -1.35
RPN11YFR004W YET1P35723 206 aa6.6□□□□□ -1.35
RPN11YFR004W OPT1P40897 799 aa6.6□□□□□ -1.35
RPN11YFR004W ALG2P43636 503 aa6.6□□□□□ -1.35
RPN11YFR004W APT1P49435 187 aaKnown RBP6.6□□□□□ -1.35
RPN11YFR004W UBP15P50101 1230 aa6.6□□□□□ -1.35
RPN11YFR004W DOS2P54858 310 aa6.6□□□□□ -1.35
RPN11YFR004W MDM1Q01846 1127 aa6.6□□□□□ -1.35
RPN11YFR004W VPS60Q03390 229 aa6.6□□□□□ -1.35
RPN11YFR004W SMD2Q06217 110 aaKnown RBP6.6□□□□□ -1.35
RPN11YFR004W YOL098CQ12496 1037 aa6.6□□□□□ -1.35
RPN11YFR004W TY1A-DR4O74302 440 aa6.59□□□□□ -1.35
RPN11YFR004W TUF1P02992 437 aaKnown RBP6.59□□□□□ -1.35
RPN11YFR004W RPL22AP05749 121 aaKnown RBP6.59□□□□□ -1.35
RPN11YFR004W TY1A-HP0C2I4 478 aaKnown RBP6.59□□□□□ -1.35
RPN11YFR004W TY1A-AP0CX57 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-PR1P0CX58 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-ORP0CX59 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-PR2P0CX60 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-DR5P0CX65 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-ER2P0CX66 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-GR3P0CX67 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-LR1P0CX68 440 aa6.59□□□□□ -1.35
RPN11YFR004W TY1A-MR2P0CX69 440 aa6.59□□□□□ -1.35
RPN11YFR004W MCM3P24279 971 aaKnown RBP6.59□□□□□ -1.35
RPN11YFR004W PSO2P30620 661 aa6.59□□□□□ -1.35
RPN11YFR004W RME1P32338 300 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms