RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	MBP1	P39678	833 aa		5.01	□□□□□ -1.61
RSM28	YDR494W	PSP2	P50109	593 aa	Known RBP	5.01	□□□□□ -1.61
RSM28	YDR494W	PFK1	P16861	987 aa	Known RBP	5	□□□□□ -1.61
RSM28	YDR494W	AGP1	P25376	633 aa		5	□□□□□ -1.61
RSM28	YDR494W	CDC12	P32468	407 aa	Known RBP	5	□□□□□ -1.61
RSM28	YDR494W	CCC2	P38995	1004 aa		5	□□□□□ -1.61
RSM28	YDR494W	URM1	P40554	99 aa	Predicted RBP	5	□□□□□ -1.61
RSM28	YDR494W	KRI1	P42846	591 aa	Known RBP	5	□□□□□ -1.61
RSM28	YDR494W	SFB2	P53953	876 aa		5	□□□□□ -1.61
RSM28	YDR494W	SBA1	P28707	216 aa	Known RBP	4.99	□□□□□ -1.61
RSM28	YDR494W	NCS6	P53088	359 aa		4.99	□□□□□ -1.61
RSM28	YDR494W	SRP1	Q02821	542 aa	Known RBP	4.99	□□□□□ -1.61
RSM28	YDR494W	FAL1	Q12099	399 aa	Known RBP	4.99	□□□□□ -1.61
RSM28	YDR494W	NPC2	Q12408	173 aa		4.99	□□□□□ -1.61
RSM28	YDR494W	CLN2	P20438	545 aa		4.98	□□□□□ -1.61
RSM28	YDR494W	HRR25	P29295	494 aa	Known RBP	4.98	□□□□□ -1.61
RSM28	YDR494W	ATG19	P35193	415 aa		4.98	□□□□□ -1.61
RSM28	YDR494W	PIN2	Q12057	282 aa		4.98	□□□□□ -1.61
RSM28	YDR494W	RPC82	P32349	654 aa		4.97	□□□□□ -1.61
RSM28	YDR494W	VPS16	Q03308	798 aa		4.97	□□□□□ -1.61
RSM28	YDR494W	DUS3	Q06053	668 aa	Known RBP	4.97	□□□□□ -1.61
RSM28	YDR494W	WHI4	Q07655	649 aa	Known RBP	4.97	□□□□□ -1.61
RSM28	YDR494W	AIM39	Q08223	395 aa		4.97	□□□□□ -1.61
RSM28	YDR494W	ENB1	Q08299	606 aa		4.97	□□□□□ -1.61
RSM28	YDR494W	LAS17	Q12446	633 aa		4.97	□□□□□ -1.61
RSM28	YDR494W	RAD53	P22216	821 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	VBA5	P36172	582 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	MAD1	P40957	749 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	GYP7	P48365	746 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	NOP7	P53261	605 aa	Known RBP	4.96	□□□□□ -1.62
RSM28	YDR494W	CWC24	P53769	259 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	SVF1	Q05515	481 aa		4.96	□□□□□ -1.62
RSM28	YDR494W	NAP1	P25293	417 aa	Known RBP	4.95	□□□□□ -1.62
RSM28	YDR494W	KAR4	P25583	335 aa		4.95	□□□□□ -1.62
RSM28	YDR494W	PAM1	P37304	830 aa	Known RBP	4.95	□□□□□ -1.62
RSM28	YDR494W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
RSM28	YDR494W	JIP5	Q06214	492 aa	Predicted RBP	4.95	□□□□□ -1.62
RSM28	YDR494W	OPI10	Q08202	246 aa		4.95	□□□□□ -1.62
RSM28	YDR494W	YKL069W	P36088	180 aa		4.94	□□□□□ -1.62
RSM28	YDR494W	SHE9	Q04172	456 aa		4.94	□□□□□ -1.62
RSM28	YDR494W	GUP2	Q08929	609 aa		4.94	□□□□□ -1.62
RSM28	YDR494W	UPC2	Q12151	913 aa		4.94	□□□□□ -1.62
RSM28	YDR494W	YKR078W	P36158	585 aa	Known RBP	4.93	□□□□□ -1.62
RSM28	YDR494W	TSL1	P38427	1098 aa	Known RBP	4.93	□□□□□ -1.62
RSM28	YDR494W	YER158C	P40095	573 aa		4.93	□□□□□ -1.62
RSM28	YDR494W	YPR196W	Q06595	470 aa		4.93	□□□□□ -1.62
RSM28	YDR494W	PRI2	P20457	528 aa		4.92	□□□□□ -1.62
RSM28	YDR494W	BUL1	P48524	976 aa		4.92	□□□□□ -1.62
RSM28	YDR494W	YKE2	P52553	114 aa		4.92	□□□□□ -1.62
RSM28	YDR494W	RAI1	P53063	387 aa	Known RBP	4.92	□□□□□ -1.62
RSM28	YDR494W	YDR306C	Q06640	478 aa		4.92	□□□□□ -1.62
RSM28	YDR494W	NPP1	P25353	742 aa		4.91	□□□□□ -1.62
RSM28	YDR494W	EFT1	P32324	842 aa	Known RBP	4.91	□□□□□ -1.62
RSM28	YDR494W	STE14	P32584	239 aa		4.91	□□□□□ -1.62
RSM28	YDR494W	OAR1	P35731	278 aa		4.91	□□□□□ -1.62
RSM28	YDR494W	YBR238C	P38330	731 aa	Known RBP	4.91	□□□□□ -1.62
RSM28	YDR494W	PPM2	Q08282	695 aa		4.91	□□□□□ -1.62
RSM28	YDR494W	CAD1	P24813	409 aa	Known RBP	4.9	□□□□□ -1.63
RSM28	YDR494W	CDC48	P25694	835 aa	Known RBP	4.9	□□□□□ -1.63
RSM28	YDR494W	MOH1	P38191	138 aa		4.9	□□□□□ -1.63
RSM28	YDR494W	YLR040C	Q07988	224 aa		4.9	□□□□□ -1.63
RSM28	YDR494W	SED4	P25365	1065 aa		4.89	□□□□□ -1.63
RSM28	YDR494W	PPH3	P32345	308 aa		4.89	□□□□□ -1.63
RSM28	YDR494W	AFR1	P33304	620 aa		4.89	□□□□□ -1.63
RSM28	YDR494W	NOT3	P06102	836 aa	Known RBP	4.88	□□□□□ -1.63
RSM28	YDR494W	MRP8	P35719	219 aa		4.88	□□□□□ -1.63
RSM28	YDR494W	YOL073C	Q08232	322 aa		4.88	□□□□□ -1.63
RSM28	YDR494W	ADE8	P04161	214 aa		4.87	□□□□□ -1.63
RSM28	YDR494W	AAR2	P32357	355 aa	Predicted RBP	4.87	□□□□□ -1.63
RSM28	YDR494W	KTR4	P38131	464 aa		4.87	□□□□□ -1.63
RSM28	YDR494W	PBY1	P38254	753 aa		4.87	□□□□□ -1.63
RSM28	YDR494W	SLU7	Q02775	382 aa	Known RBP	4.87	□□□□□ -1.63
RSM28	YDR494W	TRP4	P07285	380 aa	Predicted RBP	4.86	□□□□□ -1.63
RSM28	YDR494W	ERG4	P25340	473 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	STE13	P33894	931 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	YPT53	P36019	220 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	YRO2	P38079	344 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	SUL1	P38359	859 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	SIT1	P39980	628 aa		4.86	□□□□□ -1.63
RSM28	YDR494W	SSL1	Q04673	461 aa	Predicted RBP	4.86	□□□□□ -1.63
RSM28	YDR494W	FBP1	P09201	348 aa		4.85	□□□□□ -1.63
RSM28	YDR494W	VAC8	P39968	578 aa		4.85	□□□□□ -1.63
RSM28	YDR494W	IRR1	P40541	1150 aa		4.85	□□□□□ -1.63
RSM28	YDR494W	STE5	P32917	917 aa		4.84	□□□□□ -1.63
RSM28	YDR494W	SPF1	P39986	1215 aa	Known RBP	4.84	□□□□□ -1.63
RSM28	YDR494W	UBA2	P52488	636 aa		4.84	□□□□□ -1.63
RSM28	YDR494W	ALD6	P54115	500 aa	Known RBP	4.84	□□□□□ -1.63
RSM28	YDR494W	ERG5	P54781	538 aa		4.84	□□□□□ -1.63
RSM28	YDR494W	BUL2	Q03758	920 aa	Known RBP	4.84	□□□□□ -1.63
RSM28	YDR494W	HBS1	P32769	611 aa	Known RBP	4.83	□□□□□ -1.64
RSM28	YDR494W	TPO2	P53283	614 aa		4.83	□□□□□ -1.64
RSM28	YDR494W	VPS30	Q02948	557 aa		4.83	□□□□□ -1.64
RSM28	YDR494W	SEC21	P32074	935 aa	Known RBP	4.82	□□□□□ -1.64
RSM28	YDR494W	RPD3	P32561	433 aa		4.82	□□□□□ -1.64
RSM28	YDR494W	ERT1	P38140	529 aa		4.82	□□□□□ -1.64
RSM28	YDR494W	SDP1	P40479	209 aa		4.82	□□□□□ -1.64
RSM28	YDR494W	TDA5	Q06417	326 aa	Known RBP	4.82	□□□□□ -1.64
RSM28	YDR494W	TRM13	Q12383	476 aa		4.82	□□□□□ -1.64
RSM28	YDR494W	YBR184W	P38299	523 aa		4.81	□□□□□ -1.64
RSM28	YDR494W	TOK1	P40310	691 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 24.8 ms