RNA–Protein interactions for RNA: YDR460W

TFB3, Transcript of Subunit of TFIIH and nucleotide excision repair factor 3 complexes, yeast

Gene TFB3, Length 966 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB3	YDR460W	RPT1	P33299	467 aa	Known RBP	5.07	□□□□□ -1.6
TFB3	YDR460W	TFC3	P34111	1160 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	MRPL10	P36520	322 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	YHL008C	P38750	627 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	ILM1	P47155	203 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	YGL081W	P53156	320 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	BTN2	P53286	410 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	IST1	P53843	298 aa	Predicted RBP	5.07	□□□□□ -1.6
TFB3	YDR460W	NOP15	P53927	220 aa	Predicted RBP	5.07	□□□□□ -1.6
TFB3	YDR460W	RCF1	Q03713	159 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	RSC2	Q06488	889 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	PEX19	Q07418	342 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	INP54	Q08227	384 aa	Known RBP	5.07	□□□□□ -1.6
TFB3	YDR460W	ABP140	Q08641	628 aa	Known RBP	5.07	□□□□□ -1.6
TFB3	YDR460W	NFI1	Q12216	726 aa		5.07	□□□□□ -1.6
TFB3	YDR460W	AUS1	Q08409	1394 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	FLP1	P03870	423 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	CLN1	P20437	546 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	PYC2	P32327	1180 aa	Known RBP	5.06	□□□□□ -1.6
TFB3	YDR460W	AIM20	P40451	204 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	SET2	P46995	733 aa	Known RBP	5.06	□□□□□ -1.6
TFB3	YDR460W	LYS5	P50113	272 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	PPT1	P53043	513 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	DSL1	P53847	754 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	SPO19	Q03029	223 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	TY1A-DR2	Q03964	440 aa	Known RBP	5.06	□□□□□ -1.6
TFB3	YDR460W	OMS1	Q06668	471 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	NKP1	Q12493	238 aa		5.06	□□□□□ -1.6
TFB3	YDR460W	PUP2	P32379	260 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	YEL043W	P32618	956 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	NFU1	P32860	256 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.05	□□□□□ -1.6	not detected
TFB3	YDR460W	ECM2	P38241	364 aa	Known RBP	5.05	□□□□□ -1.6
TFB3	YDR460W	PRK1	P40494	810 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	PXA1	P41909	870 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	OYE2	Q03558	400 aa	Known RBP	5.05	□□□□□ -1.6
TFB3	YDR460W	OXR1	Q08952	273 aa		5.05	□□□□□ -1.6
TFB3	YDR460W	CFT2	Q12102	859 aa	Predicted RBP	5.05	□□□□□ -1.6
TFB3	YDR460W	COB	P00163	385 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	YMR085W	P0CF18	432 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	YEF3	P16521	1044 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	DPH5	P32469	300 aa	Predicted RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	PRP40	P33203	583 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	LIN1	P38852	340 aa	Predicted RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	VPS8	P39702	1274 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	RVS167	P39743	482 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	RRT14	P40470	206 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	SEC26	P41810	973 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	TFG2	P41896	400 aa	Predicted RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	GPD2	P41911	440 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	ARP5	P53946	755 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	UBX2	Q04228	584 aa		5.04	□□□□□ -1.6
TFB3	YDR460W	RSA3	Q05942	220 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	CHS5	Q12114	671 aa	Known RBP	5.04	□□□□□ -1.6
TFB3	YDR460W	SWI1	P09547	1314 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	SAC3	P46674	1301 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	NAT1	P12945	854 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	TAL1	P15019	335 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	STE11	P23561	717 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	RAD16	P31244	790 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	HIR2	P32480	875 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	BRN1	P38170	754 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	OLA1	P38219	394 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	ARB1	P40024	610 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	MSH6	Q03834	1242 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	ERB1	Q04660	807 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	YCS4	Q06156	1176 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	SLK19	Q08581	821 aa	Known RBP	5.03	□□□□□ -1.6
TFB3	YDR460W	SLX4	Q12098	748 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	ATG9	Q12142	997 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	SIR4	P11978	1358 aa		5.03	□□□□□ -1.6
TFB3	YDR460W	NUP145	P49687	1317 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	TOM70	P07213	617 aa	Known RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	RNR2	P09938	399 aa	Known RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	BIK1	P11709	440 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	FUS1	P11710	512 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	SUI2	P20459	304 aa	Known RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	ELM1	P32801	640 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	RAD5	P32849	1169 aa	Predicted RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	DUR3	P33413	735 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	MET1	P36150	593 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	PAM1	P37304	830 aa	Known RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	SPT8	P38915	602 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	FYV10	P40492	516 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	CIR1	P42940	261 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	NUT1	P53114	1132 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	MAL13	P53338	473 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	LSC1	P53598	329 aa	Known RBP	5.02	□□□□□ -1.61
TFB3	YDR460W	DNM1	P54861	757 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	TOS4	Q06266	489 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	SNF2	P22082	1703 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	RAV1	P47104	1357 aa		5.02	□□□□□ -1.61
TFB3	YDR460W	MRP10	O75012	95 aa		5.01	□□□□□ -1.61
TFB3	YDR460W	HCA4	P20448	770 aa	Known RBP	5.01	□□□□□ -1.61
TFB3	YDR460W	SSO1	P32867	290 aa		5.01	□□□□□ -1.61
TFB3	YDR460W	YKR075C	P36155	307 aa		5.01	□□□□□ -1.61
TFB3	YDR460W	SHC1	P39000	512 aa		5.01	□□□□□ -1.61
TFB3	YDR460W	INP51	P40559	946 aa	Known RBP	5.01	□□□□□ -1.61
TFB3	YDR460W	YRB1	P41920	201 aa	Known RBP	5.01	□□□□□ -1.61
TFB3	YDR460W	LEM3	P42838	414 aa		5.01	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms