RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	INP52	P50942	1183 aa		7.27	□□□□□ -1.25
RRP40	YOL142W	JIP5	Q06214	492 aa	Predicted RBP	7.27	□□□□□ -1.25
RRP40	YOL142W	NSI1	Q12457	570 aa		7.27	□□□□□ -1.25
RRP40	YOL142W	RPO31	P04051	1460 aa		7.26	□□□□□ -1.25
RRP40	YOL142W	RER2	P35196	286 aa		7.26	□□□□□ -1.25
RRP40	YOL142W	YJL045W	P47052	634 aa		7.26	□□□□□ -1.25
RRP40	YOL142W	TMA46	Q12000	345 aa	Known RBP	7.26	□□□□□ -1.25
RRP40	YOL142W	NAP1	P25293	417 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	SYP1	P25623	870 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	7.25	□□□□□ -1.25	not detected
RRP40	YOL142W	MET10	P39692	1035 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-H	O13535	1793 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-DR5	P0C2I2	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-DR6	P0C2I3	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-LR2	P0C2I5	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-PR2	P0C2J0	1756 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-JR1	P47098	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-ML2	Q03434	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-ER1	Q03612	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-ML1	Q04711	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-GR2	Q12269	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-OL	Q12273	1755 aa		7.25	□□□□□ -1.25
RRP40	YOL142W	TY1B-PL	Q12414	1755 aa	Known RBP	7.25	□□□□□ -1.25
RRP40	YOL142W	UFD4	P33202	1483 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	YCF1	P39109	1515 aa	Known RBP	7.24	□□□□□ -1.25
RRP40	YOL142W	KIP1	P28742	1111 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	MAC1	P35192	417 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	CTH1	P47976	325 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	SDH1	Q00711	640 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	MAG2	Q06436	670 aa	Known RBP	7.24	□□□□□ -1.25
RRP40	YOL142W	TRE1	Q08919	783 aa		7.24	□□□□□ -1.25
RRP40	YOL142W	CLN2	P20438	545 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	PEX7	P39108	375 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	MAD1	P40957	749 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	CNN1	P43618	361 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	EEB1	Q02891	456 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	BRE4	Q07660	1125 aa		7.23	□□□□□ -1.25
RRP40	YOL142W	DBP5	P20449	482 aa	Known RBP	7.22	□□□□□ -1.25
RRP40	YOL142W	LIP5	P32875	414 aa		7.22	□□□□□ -1.25
RRP40	YOL142W	GPB2	P39717	880 aa		7.22	□□□□□ -1.25
RRP40	YOL142W	VPS16	Q03308	798 aa		7.22	□□□□□ -1.25
RRP40	YOL142W	PIN2	Q12057	282 aa		7.22	□□□□□ -1.25
RRP40	YOL142W	SAM35	P14693	329 aa		7.21	□□□□□ -1.26
RRP40	YOL142W	SEA4	P38164	1038 aa		7.21	□□□□□ -1.26
RRP40	YOL142W	RGD1	P38339	666 aa		7.21	□□□□□ -1.26
RRP40	YOL142W	YHL012W	P38709	493 aa		7.21	□□□□□ -1.26
RRP40	YOL142W	TIF35	Q04067	274 aa	Known RBP	7.21	□□□□□ -1.26
RRP40	YOL142W	YPL260W	Q08977	551 aa		7.21	□□□□□ -1.26
RRP40	YOL142W	RKR1	Q04781	1562 aa		7.2	□□□□□ -1.26
RRP40	YOL142W	POL1	P13382	1468 aa		7.2	□□□□□ -1.26
RRP40	YOL142W	YSC84	P32793	468 aa		7.2	□□□□□ -1.26
RRP40	YOL142W	FAA4	P47912	694 aa	Known RBP	7.2	□□□□□ -1.26
RRP40	YOL142W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	7.2	□□□□□ -1.26	not detected
RRP40	YOL142W	SPO21	Q12411	609 aa		7.2	□□□□□ -1.26
RRP40	YOL142W	ESC1	Q03661	1658 aa	Known RBP	7.19	□□□□□ -1.26
RRP40	YOL142W	TRP2	P00899	507 aa	Known RBP	7.19	□□□□□ -1.26
RRP40	YOL142W	MLS1	P30952	554 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	PRO1	P32264	428 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	LYP1	P32487	611 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	YGR053C	P53234	283 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	GDE1	Q02979	1223 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	SSY1	Q03770	852 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	AOS1	Q06624	347 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	CDC25	P04821	1589 aa		7.19	□□□□□ -1.26
RRP40	YOL142W	ADP1	P25371	1049 aa		7.18	□□□□□ -1.26
RRP40	YOL142W	MDL2	P33311	773 aa		7.18	□□□□□ -1.26
RRP40	YOL142W	PTC7	P38797	343 aa		7.18	□□□□□ -1.26
RRP40	YOL142W	MPH1	P40562	993 aa		7.18	□□□□□ -1.26
RRP40	YOL142W	TYW3	P53177	273 aa		7.18	□□□□□ -1.26
RRP40	YOL142W	MCM7	P38132	845 aa		7.17	□□□□□ -1.26
RRP40	YOL142W	GTS1	P40956	396 aa		7.17	□□□□□ -1.26
RRP40	YOL142W	HNT2	P49775	206 aa		7.17	□□□□□ -1.26
RRP40	YOL142W	CWC24	P53769	259 aa		7.17	□□□□□ -1.26
RRP40	YOL142W	SRO9	P25567	434 aa	Known RBP	7.16	□□□□□ -1.26
RRP40	YOL142W	RPN3	P40016	523 aa	Known RBP	7.16	□□□□□ -1.26
RRP40	YOL142W	NOP7	P53261	605 aa	Known RBP	7.16	□□□□□ -1.26
RRP40	YOL142W	HOS3	Q02959	697 aa	Known RBP	7.16	□□□□□ -1.26
RRP40	YOL142W	RCL1	Q08096	367 aa	Predicted RBP	7.16	□□□□□ -1.26
RRP40	YOL142W	COQ4	O13525	335 aa		7.15	□□□□□ -1.26
RRP40	YOL142W	YER152C	P10356	443 aa		7.15	□□□□□ -1.26
RRP40	YOL142W	MOT2	P34909	587 aa	Known RBP	7.15	□□□□□ -1.26
RRP40	YOL142W	TNA1	P53322	534 aa		7.15	□□□□□ -1.26
RRP40	YOL142W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	7.15	□□□□□ -1.26	not detected
RRP40	YOL142W	TOP2	P06786	1428 aa	Known RBP	7.15	□□□□□ -1.27
RRP40	YOL142W	INO1	P11986	533 aa		7.14	□□□□□ -1.27
RRP40	YOL142W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	7.14	□□□□□ -1.27	not detected
RRP40	YOL142W	ALD6	P54115	500 aa	Known RBP	7.14	□□□□□ -1.27
RRP40	YOL142W	LPX1	Q12405	387 aa	Known RBP	7.14	□□□□□ -1.27
RRP40	YOL142W	SNF5	P18480	905 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	HSP78	P33416	811 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	BAP2	P38084	609 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	VAC8	P39968	578 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	SPO20	Q04359	397 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	GNT1	Q12096	491 aa		7.13	□□□□□ -1.27
RRP40	YOL142W	RPA190	P10964	1664 aa	Known RBP	7.12	□□□□□ -1.27
RRP40	YOL142W	ORC3	P54790	616 aa		7.12	□□□□□ -1.27
RRP40	YOL142W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	7.12	□□□□□ -1.27	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 51 ms