RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W GCV1P48015 400 aa3.66□□□□□ -1.82
VPS41YDR080W YML020WQ03722 664 aa3.66□□□□□ -1.82
VPS41YDR080W YCS4Q06156 1176 aa3.66□□□□□ -1.82
VPS41YDR080W YLL066CQ99208 1374 aa3.66□□□□□ -1.82
VPS41YDR080W RIM15P43565 1770 aa3.66□□□□□ -1.82
VPS41YDR080W YLR419WQ06698 1435 aaKnown RBP3.66□□□□□ -1.82
VPS41YDR080W MCM5P29496 775 aaKnown RBP3.66□□□□□ -1.82
VPS41YDR080W PAF1P38351 445 aa3.66□□□□□ -1.82
VPS41YDR080W ALG6Q12001 544 aaKnown RBP3.66□□□□□ -1.82
VPS41YDR080W HXK1P04806 485 aaKnown RBP3.65□□□□□ -1.82
VPS41YDR080W TAF5P38129 798 aa3.65□□□□□ -1.82
VPS41YDR080W RVS167P39743 482 aaKnown RBP3.65□□□□□ -1.82
VPS41YDR080W SAM37P50110 327 aa3.65□□□□□ -1.82
VPS41YDR080W EAR1Q03212 550 aa3.65□□□□□ -1.82
VPS41YDR080W PMT7Q06644 662 aa3.65□□□□□ -1.82
VPS41YDR080W GPT2P36148 743 aa3.65□□□□□ -1.83
VPS41YDR080W RDH54P38086 958 aa3.65□□□□□ -1.83
VPS41YDR080W NEM1P38757 446 aa3.65□□□□□ -1.83
VPS41YDR080W SLS1P42900 643 aa3.65□□□□□ -1.83
VPS41YDR080W MEC3Q02574 474 aa3.65□□□□□ -1.83
VPS41YDR080W ULP1Q02724 621 aa3.65□□□□□ -1.83
VPS41YDR080W PIC2P40035 300 aa3.64□□□□□ -1.83
VPS41YDR080W UTP22P53254 1237 aaPredicted RBP3.64□□□□□ -1.83
VPS41YDR080W VPS35P34110 944 aa3.64□□□□□ -1.83
VPS41YDR080W YGR130CP53278 816 aa3.64□□□□□ -1.83
VPS41YDR080W DAL4Q04895 635 aa3.64□□□□□ -1.83
VPS41YDR080W YOR223WQ12015 292 aa3.64□□□□□ -1.83
VPS41YDR080W SBP1P10080 294 aaKnown RBP3.63□□□□□ -1.83
VPS41YDR080W RPT1P33299 467 aaKnown RBP3.63□□□□□ -1.83
VPS41YDR080W NRD1P53617 575 aaKnown RBP RIP-Chip data3.63□□□□□ -1.83not detected
VPS41YDR080W GCD1P09032 578 aaPredicted RBP3.63□□□□□ -1.83
VPS41YDR080W MSH3P25336 1018 aa3.63□□□□□ -1.83
VPS41YDR080W KAE1P36132 386 aa3.63□□□□□ -1.83
VPS41YDR080W LYS4P49367 693 aaPredicted RBP3.63□□□□□ -1.83
VPS41YDR080W PRP43P53131 767 aaKnown RBP3.63□□□□□ -1.83
VPS41YDR080W YIL177CP40434 1758 aa3.63□□□□□ -1.83
VPS41YDR080W YJL225CP40889 1758 aa3.63□□□□□ -1.83
VPS41YDR080W MSH4P40965 878 aaPredicted RBP3.63□□□□□ -1.83
VPS41YDR080W YPL109CQ02981 657 aa3.63□□□□□ -1.83
VPS41YDR080W CHS2P14180 963 aa3.62□□□□□ -1.83
VPS41YDR080W YGR045CP53229 120 aa3.62□□□□□ -1.83
VPS41YDR080W DOT1Q04089 582 aaKnown RBP3.62□□□□□ -1.83
VPS41YDR080W YKR075CP36155 307 aa3.62□□□□□ -1.83
VPS41YDR080W ECM2P38241 364 aaKnown RBP3.62□□□□□ -1.83
VPS41YDR080W CIC1P38779 376 aaKnown RBP3.62□□□□□ -1.83
VPS41YDR080W SPO74P45819 413 aa3.62□□□□□ -1.83
VPS41YDR080W ALT1P52893 592 aa3.62□□□□□ -1.83
VPS41YDR080W FAR11P53917 953 aa3.62□□□□□ -1.83
VPS41YDR080W UTP5Q04177 643 aaKnown RBP3.62□□□□□ -1.83
VPS41YDR080W MAG2Q06436 670 aaKnown RBP3.62□□□□□ -1.83
VPS41YDR080W GIC2Q06648 383 aa3.62□□□□□ -1.83
VPS41YDR080W SSM4P40318 1319 aa3.62□□□□□ -1.83
VPS41YDR080W REI1P38344 393 aaPredicted RBP3.61□□□□□ -1.83
VPS41YDR080W GCD6P32501 712 aaKnown RBP3.61□□□□□ -1.83
VPS41YDR080W YGL140CP53120 1219 aa3.61□□□□□ -1.83
VPS41YDR080W SIR4P11978 1358 aa3.6□□□□□ -1.83
VPS41YDR080W OYE3P41816 400 aaPredicted RBP3.6□□□□□ -1.83
VPS41YDR080W YJR107WP47145 328 aa3.6□□□□□ -1.83
VPS41YDR080W SLM3Q12093 417 aa3.6□□□□□ -1.83
VPS41YDR080W SEC20P28791 383 aa3.6□□□□□ -1.83
VPS41YDR080W FYV10P40492 516 aa3.6□□□□□ -1.83
VPS41YDR080W SDH1Q00711 640 aa3.6□□□□□ -1.83
VPS41YDR080W SPR28Q04921 423 aa3.6□□□□□ -1.83
VPS41YDR080W CYC7P00045 113 aa3.6□□□□□ -1.83
VPS41YDR080W RPS9BP05755 195 aaKnown RBP3.6□□□□□ -1.83
VPS41YDR080W COQ2P32378 372 aa3.6□□□□□ -1.83
VPS41YDR080W WHI3P34761 661 aaKnown RBP3.6□□□□□ -1.83
VPS41YDR080W OMA1P36163 345 aa3.6□□□□□ -1.83
VPS41YDR080W GNP1P48813 663 aa3.6□□□□□ -1.83
VPS41YDR080W ADI1Q03677 179 aa3.6□□□□□ -1.83
VPS41YDR080W MED7Q08278 222 aa3.6□□□□□ -1.83
VPS41YDR080W MHP1P43638 1398 aa3.59□□□□□ -1.83
VPS41YDR080W POM152P39685 1337 aa3.59□□□□□ -1.83
VPS41YDR080W ARL1P38116 183 aaKnown RBP3.59□□□□□ -1.83
VPS41YDR080W TOS1P38288 455 aa3.59□□□□□ -1.83
VPS41YDR080W ELA1P53861 379 aaPredicted RBP3.59□□□□□ -1.83
VPS41YDR080W BRE4Q07660 1125 aa3.59□□□□□ -1.83
VPS41YDR080W MCM2P29469 868 aa3.59□□□□□ -1.84
VPS41YDR080W PUB1P32588 453 aaKnown RBP RIP-Chip data3.59□□□□□ -1.84not detected
VPS41YDR080W AFG2P32794 780 aa3.59□□□□□ -1.84
VPS41YDR080W PEX28P38848 579 aa3.59□□□□□ -1.84
VPS41YDR080W PEX13P80667 386 aa3.59□□□□□ -1.84
VPS41YDR080W CYC8P14922 966 aa3.58□□□□□ -1.84
VPS41YDR080W ESL2P36168 1195 aa3.58□□□□□ -1.84
VPS41YDR080W HXT13P39924 564 aa3.58□□□□□ -1.84
VPS41YDR080W YGR122WP53272 402 aa3.58□□□□□ -1.84
VPS41YDR080W HXT17P53631 564 aa3.58□□□□□ -1.84
VPS41YDR080W HXT15P54854 567 aa3.58□□□□□ -1.84
VPS41YDR080W RPS4AP0CX35 261 aaKnown RBP3.58□□□□□ -1.84
VPS41YDR080W RPS4BP0CX36 261 aaKnown RBP3.58□□□□□ -1.84
VPS41YDR080W SEC23P15303 768 aaKnown RBP3.58□□□□□ -1.84
VPS41YDR080W YKL133CP36066 463 aa3.58□□□□□ -1.84
VPS41YDR080W NMD3P38861 518 aaKnown RBP3.58□□□□□ -1.84
VPS41YDR080W POL32P47110 350 aa3.58□□□□□ -1.84
VPS41YDR080W VMA4P22203 233 aaKnown RBP3.57□□□□□ -1.84
VPS41YDR080W PEX7P39108 375 aa3.57□□□□□ -1.84
VPS41YDR080W MMM1P41800 426 aa3.57□□□□□ -1.84
VPS41YDR080W RCM1P53972 490 aa3.57□□□□□ -1.84
VPS41YDR080W YVC1Q12324 675 aa3.57□□□□□ -1.84
VPS41YDR080W CTT1P06115 562 aa3.57□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms