Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 NR2F2-AS1-202ENST00000557863 515 ntTSL 326.18■■□□□ 1.781e-323■■■■■ 28.5
NPM1P06748 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.341e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC20.69■□□□□ 0.91e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC16.88■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 SYCP2L-202ENST00000341041 3069 ntTSL 216.88■□□□□ 0.291e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC16.86■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.281e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC13.26□□□□□ -0.291e-323■■■■■ 28
NPM1P06748 THEM7P-201ENST00000419556 672 ntBASIC11.83□□□□□ -0.521e-323■■■■■ 28.5
NPM1P06748 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC10.53□□□□□ -0.721e-323■■■■■ 28
NPM1P06748 MT-TP-201ENST00000387461 68 ntBASIC10.2□□□□□ -0.781e-323■■■□□ 19.1
NPM1P06748 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.79■■■□□ 2.682e-87■■□□□ 14.2
NPM1P06748 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.62e-87■■□□□ 14.2
NPM1P06748 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.292e-87■■□□□ 14.2
NPM1P06748 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.982e-87■■□□□ 14.2
NPM1P06748 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)19.59■□□□□ 0.732e-87■■□□□ 14.2
NPM1P06748 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-87■■□□□ 14.2
NPM1P06748 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)14.19□□□□□ -0.142e-87■■□□□ 14.2
NPM1P06748 SNORA53-201ENST00000391141 249 ntBASIC8.45□□□□□ -1.062e-87■■□□□ 14.2
NPM1P06748 SGPL1-204ENST00000486993 537 ntTSL 1 (best)34.54■■■■□ 3.124e-73■■■■■ 67
NPM1P06748 SGPL1-202ENST00000373202 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.074e-73■■■■■ 67
NPM1P06748 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC15.99■□□□□ 0.152e-55■□□□□ 8.9
NPM1P06748 MALAT1-202ENST00000534336 8708 ntBASIC11.49□□□□□ -0.572e-55■□□□□ 8.9
NPM1P06748 RPS3-213ENST00000529285 550 ntTSL 532.95■■■□□ 2.873e-45■□□□□ 8.2
NPM1P06748 RPS3-220ENST00000534555 387 ntTSL 328.31■■■□□ 2.123e-45■□□□□ 8.2
NPM1P06748 RPS3-206ENST00000526248 771 ntTSL 526.83■■□□□ 1.893e-45■□□□□ 8.2
NPM1P06748 RPS3-201ENST00000278572 907 ntTSL 3 BASIC25.37■■□□□ 1.653e-45■□□□□ 8.2
NPM1P06748 RPS3-216ENST00000530721 796 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-218ENST00000532872 737 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.823e-45■□□□□ 8.2
NPM1P06748 RPS3-208ENST00000527273 390 ntTSL 319.96■□□□□ 0.793e-45■□□□□ 8.2
NPM1P06748 RPS3-212ENST00000529173 1373 ntTSL 518.8■□□□□ 0.63e-45■□□□□ 8.2
NPM1P06748 RPS3-211ENST00000528847 639 ntTSL 518.35■□□□□ 0.533e-45■□□□□ 8.2
NPM1P06748 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.443e-45■□□□□ 8.2
NPM1P06748 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.273e-45■□□□□ 8.2
NPM1P06748 RPS3-202ENST00000422465 903 ntTSL 216.41■□□□□ 0.223e-45■□□□□ 8.2
NPM1P06748 RPS3-207ENST00000526608 710 ntTSL 5 BASIC15.97■□□□□ 0.153e-45■□□□□ 8.2
NPM1P06748 RPS3-219ENST00000534440 564 ntTSL 2 BASIC15.8■□□□□ 0.123e-45■□□□□ 8.2
NPM1P06748 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC15.65■□□□□ 0.13e-45■□□□□ 8.2
NPM1P06748 RPS3-210ENST00000528439 473 ntTSL 315.28■□□□□ 0.043e-45■□□□□ 8.2
NPM1P06748 SNORD15A-201ENST00000384214 148 ntBASIC12.7□□□□□ -0.383e-45■□□□□ 8.2
NPM1P06748 SNX5-206ENST00000469704 696 ntTSL 344.83■■■■■ 4.776e-41■□□□□ 10.1
NPM1P06748 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.756e-41■□□□□ 10.1
NPM1P06748 SNX5-203ENST00000419004 778 ntTSL 527.94■■■□□ 2.066e-41■□□□□ 10.1
NPM1P06748 SNX5-204ENST00000431277 840 ntTSL 526.64■■□□□ 1.866e-41■□□□□ 10.1
NPM1P06748 OVOL2-204ENST00000486776 550 ntTSL 323.35■■□□□ 1.336e-41■□□□□ 10.1
NPM1P06748 SNX5-214ENST00000490175 2025 ntTSL 1 (best)22.41■■□□□ 1.186e-41■□□□□ 10.1
NPM1P06748 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.056e-41■□□□□ 10.1
NPM1P06748 SNX5-207ENST00000474883 695 ntTSL 59.97□□□□□ -0.816e-41■□□□□ 10.1
NPM1P06748 SNORD17-201ENST00000390930 237 ntBASIC5.71□□□□□ -1.56e-41■□□□□ 10.1
NPM1P06748 HSP90AA1-210ENST00000560130 488 ntTSL 211.9□□□□□ -0.56e-37■■□□□ 12.8
NPM1P06748 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC22.9■■□□□ 1.265e-33■□□□□ 8.3
NPM1P06748 SNORA50.1-201ENST00000628590 135 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 SNORA50C-201ENST00000408535 133 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)13.92□□□□□ -0.182e-32■■■■□ 21.7
NPM1P06748 NCL-209ENST00000484328 369 ntTSL 210.16□□□□□ -0.782e-32■■■□□ 16
NPM1P06748 WDR82-203ENST00000469000 587 ntTSL 528.49■■■□□ 2.152e-32■■■■■ 230.1
NPM1P06748 WDR82-202ENST00000463624 574 ntTSL 422.82■■□□□ 1.242e-32■■■■■ 230.1
NPM1P06748 WDR82-201ENST00000296490 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.172e-32■■■■■ 230.1
NPM1P06748 MIRLET7G-201ENST00000362280 84 ntBASIC2.83□□□□□ -1.962e-32■■■■■ 230.1
NPM1P06748 HSP90AA1-203ENST00000553585 581 ntTSL 312.45□□□□□ -0.423e-32■■■■■ 30.7
NPM1P06748 HSP90AA1-205ENST00000555662 429 ntTSL 210.67□□□□□ -0.73e-32■■■■■ 30.7
NPM1P06748 GAS5-209ENST00000430245 723 ntTSL 3 BASIC22.56■■□□□ 1.21e-27■■□□□ 12.8
NPM1P06748 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC17.67■□□□□ 0.421e-27■■□□□ 12.8
NPM1P06748 GAS5-203ENST00000416952 799 ntTSL 216.09■□□□□ 0.171e-27■■□□□ 12.8
NPM1P06748 GAS5-216ENST00000443799 897 ntTSL 516.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-214ENST00000436656 822 ntTSL 316.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-224ENST00000454068 688 ntTSL 5 BASIC15.72■□□□□ 0.111e-27■■□□□ 12.8
NPM1P06748 GAS5-210ENST00000431268 1698 ntTSL 214.5□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-229ENST00000458220 469 ntTSL 214.49□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-220ENST00000449589 712 ntTSL 313.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-219ENST00000449289 542 ntTSL 3 BASIC13.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-226ENST00000455838 632 ntTSL 213.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-211ENST00000432536 959 ntTSL 2 BASIC12.82□□□□□ -0.361e-27■■□□□ 12.8
NPM1P06748 GAS5-227ENST00000456293 583 ntTSL 311.88□□□□□ -0.511e-27■■□□□ 12.8
NPM1P06748 GAS5-204ENST00000421068 1060 ntTSL 211.25□□□□□ -0.611e-27■■□□□ 12.8
NPM1P06748 GAS5-228ENST00000456812 723 ntTSL 311.2□□□□□ -0.621e-27■■□□□ 12.8
NPM1P06748 GAS5-206ENST00000422183 745 ntTSL 210.81□□□□□ -0.681e-27■■□□□ 12.8
NPM1P06748 GAS5-201ENST00000412059 979 ntTSL 510.31□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-215ENST00000442067 1114 ntTSL 210.3□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-218ENST00000448718 565 ntTSL 2 BASIC9.97□□□□□ -0.811e-27■■□□□ 12.8
NPM1P06748 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC9.34□□□□□ -0.911e-27■■□□□ 12.8
NPM1P06748 GAS5-223ENST00000452197 483 ntTSL 3 BASIC8.96□□□□□ -0.981e-27■■□□□ 12.8
NPM1P06748 GAS5-208ENST00000425771 242 ntTSL 3 BASIC7.95□□□□□ -1.141e-27■■□□□ 12.8
NPM1P06748 GAS5-205ENST00000422008 497 ntTSL 37.23□□□□□ -1.251e-27■■□□□ 12.8
NPM1P06748 GAS5-213ENST00000436285 772 ntTSL 26.58□□□□□ -1.361e-27■■□□□ 12.8
NPM1P06748 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.33e-25■■■■■ 32.4
NPM1P06748 MIR4449-201ENST00000578365 66 ntBASIC44.5■■■■■ 4.714e-23■□□□□ 8.9
NPM1P06748 DANCR-203ENST00000441504 336 ntTSL 229.83■■■□□ 2.374e-23■□□□□ 8.9
NPM1P06748 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC26.9■■□□□ 1.94e-23■□□□□ 8.9
NPM1P06748 RNU6-9-201ENST00000384776 107 ntBASIC7.57□□□□□ -1.21e-20■□□□□ 8.1
NPM1P06748 HBM-202ENST00000472539 592 ntTSL 534.16■■■■□ 3.062e-18■□□□□ 9.1
NPM1P06748 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.32e-18■□□□□ 9.1
NPM1P06748 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.72e-16■■■□□ 17.5
NPM1P06748 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC15.44■□□□□ 0.062e-16■■■□□ 17.5
NPM1P06748 SNORD3B-1-201ENST00000577988 758 ntBASIC22.67■■□□□ 1.223e-15■■■■■ 90.5
NPM1P06748 SNORD3B-1-203ENST00000631292 217 nt17.65■□□□□ 0.423e-15■■■■■ 90.5
NPM1P06748 SNORD3B-1-202ENST00000617128 218 nt17.22■□□□□ 0.353e-15■■■■■ 90.5
Retrieved 100 of 408 protein–RNA pairs in 22.6 ms