Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 AC135776.1-201ENST00000319817 2481 ntBASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.78■□□□□ 0.76
SMARCAL1Q9NZC9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 SOX15-203ENST00000570788 1093 ntBASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 HLA-B-256ENST00000639848 1089 ntBASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
SMARCAL1Q9NZC9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMARCAL1Q9NZC9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 AC139713.2-201ENST00000641328 2723 ntBASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 AC060766.5-201ENST00000590539 871 ntBASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 HLA-A-209ENST00000638375 975 ntBASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 MTMR9LP-203ENST00000426597 1545 ntBASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCAL1Q9NZC9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 ESPNP-201ENST00000270691 2015 ntBASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.75■□□□□ 0.75
SMARCAL1Q9NZC9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms