Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 PCDHB18P-201ENST00000524813 2368 ntBASIC20.29■□□□□ 0.84
CCDC42Q96M95 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC42Q96M95 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC42Q96M95 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 AL109923.1-201ENST00000618799 583 ntBASIC20.28■□□□□ 0.84
CCDC42Q96M95 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 AC068880.1-201ENST00000507289 2297 ntBASIC20.28■□□□□ 0.84
CCDC42Q96M95 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC42Q96M95 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC42Q96M95 KRT8P41-201ENST00000533985 1514 ntBASIC20.27■□□□□ 0.84
CCDC42Q96M95 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 RCC2P6-201ENST00000526625 1557 ntBASIC20.27■□□□□ 0.84
CCDC42Q96M95 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CCDC42Q96M95 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC42Q96M95 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.27■□□□□ 0.83
CCDC42Q96M95 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.27■□□□□ 0.83
CCDC42Q96M95 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC42Q96M95 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC42Q96M95 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC42Q96M95 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC42Q96M95 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 AL162741.1-201ENST00000565563 1558 ntBASIC20.25■□□□□ 0.83
CCDC42Q96M95 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms