Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
KRT39Q6A163 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
KRT39Q6A163 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 AC092338.2-201ENST00000568827 1415 ntBASIC20.27■□□□□ 0.84
KRT39Q6A163 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 AL357033.4-201ENST00000617703 1807 ntBASIC20.27■□□□□ 0.84
KRT39Q6A163 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.27■□□□□ 0.84
KRT39Q6A163 AC008556.1-201ENST00000610908 2040 ntBASIC20.27■□□□□ 0.84
KRT39Q6A163 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
KRT39Q6A163 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
KRT39Q6A163 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.27■□□□□ 0.84
KRT39Q6A163 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.27■□□□□ 0.84
KRT39Q6A163 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
KRT39Q6A163 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.27■□□□□ 0.84
KRT39Q6A163 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.27■□□□□ 0.84
KRT39Q6A163 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.27■□□□□ 0.84
KRT39Q6A163 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.27■□□□□ 0.84
KRT39Q6A163 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.27■□□□□ 0.84
KRT39Q6A163 AC116562.4-202ENST00000641738 218 ntBASIC20.27■□□□□ 0.84
KRT39Q6A163 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
KRT39Q6A163 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
KRT39Q6A163 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
KRT39Q6A163 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
KRT39Q6A163 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.27■□□□□ 0.83
KRT39Q6A163 KRT8P9-201ENST00000558927 1449 ntBASIC20.27■□□□□ 0.83
KRT39Q6A163 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.26■□□□□ 0.83
KRT39Q6A163 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 CYP2D8P-201ENST00000433633 1490 ntBASIC20.26■□□□□ 0.83
KRT39Q6A163 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.26■□□□□ 0.83
KRT39Q6A163 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 TSPY14P-201ENST00000303979 915 ntBASIC20.26■□□□□ 0.83
KRT39Q6A163 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.26■□□□□ 0.83
KRT39Q6A163 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 MCCD1P1-208ENST00000445732 328 ntBASIC20.26■□□□□ 0.83
KRT39Q6A163 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.26■□□□□ 0.83
KRT39Q6A163 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.26■□□□□ 0.83
KRT39Q6A163 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
KRT39Q6A163 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT39Q6A163 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
KRT39Q6A163 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
KRT39Q6A163 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.25■□□□□ 0.83
KRT39Q6A163 AP003041.3-201ENST00000527151 707 ntBASIC20.25■□□□□ 0.83
KRT39Q6A163 EGLN1P1-201ENST00000531623 762 ntBASIC20.25■□□□□ 0.83
KRT39Q6A163 NAPSB-206ENST00000562112 1266 ntBASIC20.25■□□□□ 0.83
KRT39Q6A163 MIR4674-201ENST00000582457 87 ntBASIC20.25■□□□□ 0.83
KRT39Q6A163 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.25■□□□□ 0.83
KRT39Q6A163 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
KRT39Q6A163 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
KRT39Q6A163 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.25■□□□□ 0.83
KRT39Q6A163 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.25■□□□□ 0.83
KRT39Q6A163 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 AC007663.1-201ENST00000438948 1240 ntBASIC20.24■□□□□ 0.83
KRT39Q6A163 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
KRT39Q6A163 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.24■□□□□ 0.83
KRT39Q6A163 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms