Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 AC006058.3-201ENST00000606217 1069 ntBASIC18.21■□□□□ 0.51
FOXA1P55317 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXA1P55317 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.21■□□□□ 0.51
FOXA1P55317 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
FOXA1P55317 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
FOXA1P55317 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
FOXA1P55317 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
FOXA1P55317 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
FOXA1P55317 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXA1P55317 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
FOXA1P55317 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 ABALON-201ENST00000629058 1903 ntBASIC18.2■□□□□ 0.5
FOXA1P55317 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.2■□□□□ 0.5
FOXA1P55317 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
FOXA1P55317 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
FOXA1P55317 AC131212.4-201ENST00000623606 975 ntBASIC18.2■□□□□ 0.5
FOXA1P55317 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.2■□□□□ 0.5
FOXA1P55317 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.2■□□□□ 0.5
FOXA1P55317 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 AC068880.1-201ENST00000507289 2297 ntBASIC18.2■□□□□ 0.5
FOXA1P55317 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 HTR7P1-201ENST00000538670 1336 ntBASIC18.2■□□□□ 0.5
FOXA1P55317 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.2■□□□□ 0.5
FOXA1P55317 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
FOXA1P55317 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA1P55317 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.19■□□□□ 0.5
FOXA1P55317 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXA1P55317 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
FOXA1P55317 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA1P55317 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXA1P55317 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA1P55317 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
FOXA1P55317 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
FOXA1P55317 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXA1P55317 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
FOXA1P55317 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXA1P55317 NOC2LP2-201ENST00000407594 1944 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXA1P55317 KRT8P3-201ENST00000519669 1449 ntBASIC18.18■□□□□ 0.5
FOXA1P55317 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA1P55317 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms