Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
MSH3P20585 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
MSH3P20585 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 TSPY17P-201ENST00000450329 467 ntBASIC18.7■□□□□ 0.58
MSH3P20585 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
MSH3P20585 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
MSH3P20585 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.7■□□□□ 0.58
MSH3P20585 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.7■□□□□ 0.58
MSH3P20585 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH3P20585 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH3P20585 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
MSH3P20585 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.7■□□□□ 0.58
MSH3P20585 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSH3P20585 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.69■□□□□ 0.58
MSH3P20585 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH3P20585 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 LINC01568-207ENST00000641790 1380 ntBASIC18.69■□□□□ 0.58
MSH3P20585 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
MSH3P20585 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH3P20585 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.69■□□□□ 0.58
MSH3P20585 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH3P20585 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.69■□□□□ 0.58
MSH3P20585 AC133561.5-201ENST00000635547 218 ntBASIC18.69■□□□□ 0.58
MSH3P20585 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
MSH3P20585 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.69■□□□□ 0.58
MSH3P20585 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSH3P20585 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
MSH3P20585 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
MSH3P20585 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 AL353719.1-201ENST00000566847 864 ntBASIC18.68■□□□□ 0.58
MSH3P20585 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.68■□□□□ 0.58
MSH3P20585 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSH3P20585 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
MSH3P20585 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH3P20585 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.67■□□□□ 0.58
MSH3P20585 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
MSH3P20585 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.67■□□□□ 0.58
MSH3P20585 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 AL023803.3-201ENST00000615559 522 ntBASIC18.67■□□□□ 0.58
MSH3P20585 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MSH3P20585 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms