Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.88■□□□□ 0.61
VIMP08670 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.88■□□□□ 0.61
VIMP08670 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 SIRPAP1-201ENST00000448467 1770 ntBASIC18.88■□□□□ 0.61
VIMP08670 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VIMP08670 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
VIMP08670 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 RARRES2P4-201ENST00000514074 484 ntBASIC18.87■□□□□ 0.61
VIMP08670 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.87■□□□□ 0.61
VIMP08670 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 C2orf69P4-201ENST00000565394 541 ntBASIC18.87■□□□□ 0.61
VIMP08670 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.87■□□□□ 0.61
VIMP08670 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VIMP08670 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VIMP08670 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VIMP08670 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VIMP08670 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.86■□□□□ 0.61
VIMP08670 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VIMP08670 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.86■□□□□ 0.61
VIMP08670 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VIMP08670 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.86■□□□□ 0.61
VIMP08670 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VIMP08670 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VIMP08670 AC123595.1-201ENST00000440769 1046 ntBASIC18.86■□□□□ 0.61
VIMP08670 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 CROCCP1-201ENST00000426910 5675 ntBASIC18.86■□□□□ 0.61
VIMP08670 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VIMP08670 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VIMP08670 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.85■□□□□ 0.61
VIMP08670 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
VIMP08670 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VIMP08670 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.85■□□□□ 0.61
VIMP08670 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.85■□□□□ 0.61
VIMP08670 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.85■□□□□ 0.61
VIMP08670 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.85■□□□□ 0.61
VIMP08670 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VIMP08670 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.85■□□□□ 0.61
VIMP08670 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VIMP08670 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms