Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB3O15347 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
HMGB3O15347 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB3O15347 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB3O15347 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB3O15347 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.13■□□□□ 0.01
HMGB3O15347 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGB3O15347 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.13■□□□□ 0.01
HMGB3O15347 TERF1P2-201ENST00000583350 1212 ntBASIC15.13■□□□□ 0.01
HMGB3O15347 AC093525.10-201ENST00000625130 1569 ntBASIC15.13■□□□□ 0.01
HMGB3O15347 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
HMGB3O15347 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HMGB3O15347 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
HMGB3O15347 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB3O15347 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 AC139713.2-201ENST00000641328 2723 ntBASIC15.12■□□□□ 0.01
HMGB3O15347 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HMGB3O15347 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 COX20-201ENST00000366528 568 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGB3O15347 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC15.12■□□□□ 0.01
HMGB3O15347 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HMGB3O15347 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HMGB3O15347 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HMGB3O15347 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.12■□□□□ 0.01
HMGB3O15347 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
HMGB3O15347 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HMGB3O15347 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 LINC02228-203ENST00000641970 1355 ntBASIC15.11■□□□□ 0.01
HMGB3O15347 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.11■□□□□ 0.01
HMGB3O15347 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HMGB3O15347 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.11■□□□□ 0.01
HMGB3O15347 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC15.11■□□□□ 0.01
HMGB3O15347 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.11■□□□□ 0.01
HMGB3O15347 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HMGB3O15347 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms