Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.04■□□□□ 0.32
SUMO3P55854 LINC01568-207ENST00000641790 1380 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.04■□□□□ 0.32
SUMO3P55854 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 KRT18P22-201ENST00000402024 1347 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.04■□□□□ 0.32
SUMO3P55854 HMGA1P5-201ENST00000412453 271 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.04■□□□□ 0.32
SUMO3P55854 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.04■□□□□ 0.32
SUMO3P55854 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.04■□□□□ 0.32
SUMO3P55854 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.04■□□□□ 0.32
SUMO3P55854 AC145285.6-201ENST00000604632 637 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.04■□□□□ 0.32
SUMO3P55854 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.04■□□□□ 0.32
SUMO3P55854 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.04■□□□□ 0.32
SUMO3P55854 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SUMO3P55854 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 AC120498.9-201ENST00000339021 3867 ntBASIC17.04■□□□□ 0.32
SUMO3P55854 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SUMO3P55854 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SUMO3P55854 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.03■□□□□ 0.32
SUMO3P55854 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
SUMO3P55854 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.03■□□□□ 0.32
SUMO3P55854 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SUMO3P55854 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SUMO3P55854 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SUMO3P55854 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.02■□□□□ 0.32
SUMO3P55854 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.02■□□□□ 0.32
SUMO3P55854 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 MIR564-202ENST00000385049 94 ntBASIC17.02■□□□□ 0.32
SUMO3P55854 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.02■□□□□ 0.32
SUMO3P55854 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
SUMO3P55854 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 KRT18P41-201ENST00000518924 1277 ntBASIC17.02■□□□□ 0.32
SUMO3P55854 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
SUMO3P55854 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.02■□□□□ 0.32
SUMO3P55854 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
SUMO3P55854 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SUMO3P55854 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SUMO3P55854 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SUMO3P55854 AC008556.1-201ENST00000610908 2040 ntBASIC17.02■□□□□ 0.32
SUMO3P55854 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
SUMO3P55854 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SUMO3P55854 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SUMO3P55854 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SUMO3P55854 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SUMO3P55854 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SUMO3P55854 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.02■□□□□ 0.31
SUMO3P55854 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SUMO3P55854 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.01■□□□□ 0.31
SUMO3P55854 ANO7L1-203ENST00000602586 1720 ntBASIC17.01■□□□□ 0.31
SUMO3P55854 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SUMO3P55854 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SUMO3P55854 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.01■□□□□ 0.31
SUMO3P55854 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms