Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
EPHB3P54753 FP475955.4-201ENST00000623131 1990 ntBASIC19.66■□□□□ 0.74
EPHB3P54753 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
EPHB3P54753 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 AC141586.3-201ENST00000562166 1838 ntBASIC19.65■□□□□ 0.74
EPHB3P54753 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.65■□□□□ 0.74
EPHB3P54753 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.65■□□□□ 0.74
EPHB3P54753 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 KRT8P32-201ENST00000512863 1461 ntBASIC19.65■□□□□ 0.74
EPHB3P54753 AL158211.5-201ENST00000623583 2518 ntBASIC19.65■□□□□ 0.74
EPHB3P54753 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EPHB3P54753 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
EPHB3P54753 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.65■□□□□ 0.74
EPHB3P54753 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EPHB3P54753 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
EPHB3P54753 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EPHB3P54753 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.64■□□□□ 0.74
EPHB3P54753 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EPHB3P54753 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 MIR564-202ENST00000385049 94 ntBASIC19.64■□□□□ 0.73
EPHB3P54753 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 KRT126P-201ENST00000549467 1181 ntBASIC19.64■□□□□ 0.73
EPHB3P54753 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 HOXB1-202ENST00000577092 1414 ntBASIC19.64■□□□□ 0.73
EPHB3P54753 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.64■□□□□ 0.73
EPHB3P54753 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.64■□□□□ 0.73
EPHB3P54753 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EPHB3P54753 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
EPHB3P54753 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.63■□□□□ 0.73
EPHB3P54753 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.63■□□□□ 0.73
EPHB3P54753 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.63■□□□□ 0.73
EPHB3P54753 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
EPHB3P54753 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.63■□□□□ 0.73
EPHB3P54753 AC011498.5-201ENST00000592027 486 ntBASIC19.63■□□□□ 0.73
EPHB3P54753 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EPHB3P54753 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
EPHB3P54753 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
EPHB3P54753 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EPHB3P54753 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms