Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SIX3O95343 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX3O95343 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SIX3O95343 AP002982.1-201ENST00000492365 877 ntBASIC18.42■□□□□ 0.54
SIX3O95343 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.42■□□□□ 0.54
SIX3O95343 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SIX3O95343 AL499627.1-201ENST00000569373 2188 ntBASIC18.42■□□□□ 0.54
SIX3O95343 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX3O95343 BICD1-207ENST00000551848 1962 ntBASIC18.42■□□□□ 0.54
SIX3O95343 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX3O95343 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.42■□□□□ 0.54
SIX3O95343 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.42■□□□□ 0.54
SIX3O95343 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX3O95343 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
SIX3O95343 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.41■□□□□ 0.54
SIX3O95343 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.41■□□□□ 0.54
SIX3O95343 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.41■□□□□ 0.54
SIX3O95343 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.41■□□□□ 0.54
SIX3O95343 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SIX3O95343 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 AC091390.4-202ENST00000476426 537 ntBASIC18.41■□□□□ 0.54
SIX3O95343 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.41■□□□□ 0.54
SIX3O95343 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SIX3O95343 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SIX3O95343 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SIX3O95343 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.41■□□□□ 0.54
SIX3O95343 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SIX3O95343 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SIX3O95343 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 MTMR9LP-203ENST00000426597 1545 ntBASIC18.4■□□□□ 0.54
SIX3O95343 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SIX3O95343 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SIX3O95343 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX3O95343 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.4■□□□□ 0.54
SIX3O95343 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
SIX3O95343 AL353708.3-201ENST00000610272 989 ntBASIC18.4■□□□□ 0.54
SIX3O95343 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
SIX3O95343 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX3O95343 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX3O95343 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SIX3O95343 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.4■□□□□ 0.54
SIX3O95343 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX3O95343 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.4■□□□□ 0.54
SIX3O95343 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SIX3O95343 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.39■□□□□ 0.54
SIX3O95343 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SIX3O95343 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX3O95343 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX3O95343 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX3O95343 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.39■□□□□ 0.53
SIX3O95343 RPPH1-201ENST00000516869 333 ntBASIC18.39■□□□□ 0.53
SIX3O95343 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX3O95343 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SIX3O95343 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX3O95343 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SIX3O95343 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SIX3O95343 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms