Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 AC008764.6-201ENST00000595909 2069 ntBASIC18.34■□□□□ 0.53
CCDC28BQ9BUN5 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC28BQ9BUN5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 AC124067.4-201ENST00000519691 2379 ntBASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
CCDC28BQ9BUN5 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 AC067852.2-201ENST00000590513 2313 ntBASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 AL121829.2-201ENST00000620908 328 ntBASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC28BQ9BUN5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 DUSP5P2-201ENST00000426873 1033 ntBASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 TSPY23P-201ENST00000440136 739 ntBASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms