Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 MTMR9LP-203ENST00000426597 1545 ntBASIC18.43■□□□□ 0.54
VRK3Q8IV63 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
VRK3Q8IV63 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VRK3Q8IV63 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.42■□□□□ 0.54
VRK3Q8IV63 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.42■□□□□ 0.54
VRK3Q8IV63 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.42■□□□□ 0.54
VRK3Q8IV63 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.42■□□□□ 0.54
VRK3Q8IV63 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 AL031598.1-201ENST00000561511 1773 ntBASIC18.42■□□□□ 0.54
VRK3Q8IV63 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VRK3Q8IV63 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
VRK3Q8IV63 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.42■□□□□ 0.54
VRK3Q8IV63 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 AC008556.1-201ENST00000610908 2040 ntBASIC18.41■□□□□ 0.54
VRK3Q8IV63 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 EGLN1P1-201ENST00000531623 762 ntBASIC18.41■□□□□ 0.54
VRK3Q8IV63 AC073912.3-201ENST00000624414 853 ntBASIC18.41■□□□□ 0.54
VRK3Q8IV63 AC093525.10-201ENST00000625130 1569 ntBASIC18.41■□□□□ 0.54
VRK3Q8IV63 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VRK3Q8IV63 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VRK3Q8IV63 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 CCR12P-201ENST00000446203 998 ntBASIC18.4■□□□□ 0.54
VRK3Q8IV63 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 TSPY17P-201ENST00000450329 467 ntBASIC18.4■□□□□ 0.54
VRK3Q8IV63 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 ECEL1P2-202ENST00000465689 757 ntBASIC18.4■□□□□ 0.54
VRK3Q8IV63 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 AC116562.4-202ENST00000641738 218 ntBASIC18.4■□□□□ 0.54
VRK3Q8IV63 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 AL020996.1-203ENST00000536896 2307 ntBASIC18.4■□□□□ 0.54
VRK3Q8IV63 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VRK3Q8IV63 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.4■□□□□ 0.54
VRK3Q8IV63 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
VRK3Q8IV63 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.39■□□□□ 0.54
VRK3Q8IV63 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.39■□□□□ 0.54
VRK3Q8IV63 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VRK3Q8IV63 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.39■□□□□ 0.54
VRK3Q8IV63 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VRK3Q8IV63 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
VRK3Q8IV63 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VRK3Q8IV63 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.39■□□□□ 0.53
VRK3Q8IV63 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms