Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 AC008556.1-201ENST00000610908 2040 ntBASIC20.46■□□□□ 0.87
CDT1Q9H211 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CDT1Q9H211 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.46■□□□□ 0.87
CDT1Q9H211 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 TSPY5P-201ENST00000426936 936 ntBASIC20.46■□□□□ 0.87
CDT1Q9H211 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.46■□□□□ 0.87
CDT1Q9H211 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.46■□□□□ 0.87
CDT1Q9H211 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CDT1Q9H211 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDT1Q9H211 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CDT1Q9H211 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.46■□□□□ 0.87
CDT1Q9H211 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CDT1Q9H211 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
CDT1Q9H211 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CDT1Q9H211 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CDT1Q9H211 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.45■□□□□ 0.86
CDT1Q9H211 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.45■□□□□ 0.86
CDT1Q9H211 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.45■□□□□ 0.86
CDT1Q9H211 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.45■□□□□ 0.86
CDT1Q9H211 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CDT1Q9H211 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.45■□□□□ 0.86
CDT1Q9H211 NTF6B-201ENST00000591913 560 ntBASIC20.45■□□□□ 0.86
CDT1Q9H211 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CDT1Q9H211 AL031432.5-201ENST00000641059 760 ntBASIC20.45■□□□□ 0.86
CDT1Q9H211 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.45■□□□□ 0.86
CDT1Q9H211 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CDT1Q9H211 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDT1Q9H211 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.44■□□□□ 0.86
CDT1Q9H211 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CDT1Q9H211 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.44■□□□□ 0.86
CDT1Q9H211 AP000523.1-201ENST00000398242 1049 ntBASIC20.44■□□□□ 0.86
CDT1Q9H211 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.44■□□□□ 0.86
CDT1Q9H211 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.44■□□□□ 0.86
CDT1Q9H211 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.44■□□□□ 0.86
CDT1Q9H211 AC140113.3-201ENST00000605663 199 ntBASIC20.44■□□□□ 0.86
CDT1Q9H211 AC068587.9-201ENST00000641814 219 ntBASIC20.44■□□□□ 0.86
CDT1Q9H211 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.44■□□□□ 0.86
CDT1Q9H211 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.44■□□□□ 0.86
CDT1Q9H211 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDT1Q9H211 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.44■□□□□ 0.86
CDT1Q9H211 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CDT1Q9H211 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CDT1Q9H211 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CDT1Q9H211 FAM8A6P-201ENST00000407496 1135 ntBASIC20.43■□□□□ 0.86
CDT1Q9H211 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.43■□□□□ 0.86
CDT1Q9H211 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.43■□□□□ 0.86
CDT1Q9H211 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.43■□□□□ 0.86
CDT1Q9H211 GCSHP2-201ENST00000560971 527 ntBASIC20.43■□□□□ 0.86
CDT1Q9H211 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.43■□□□□ 0.86
CDT1Q9H211 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.43■□□□□ 0.86
CDT1Q9H211 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.43■□□□□ 0.86
CDT1Q9H211 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.43■□□□□ 0.86
CDT1Q9H211 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CDT1Q9H211 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.43■□□□□ 0.86
CDT1Q9H211 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDT1Q9H211 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDT1Q9H211 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDT1Q9H211 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDT1Q9H211 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDT1Q9H211 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.42■□□□□ 0.86
CDT1Q9H211 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms