Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.36■□□□□ 0.69
SKA1Q96BD8 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SKA1Q96BD8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.36■□□□□ 0.69
SKA1Q96BD8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.35■□□□□ 0.69
SKA1Q96BD8 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SKA1Q96BD8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MESTP1-201ENST00000404287 994 ntBASIC19.34■□□□□ 0.69
SKA1Q96BD8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 SLC25A1P4-201ENST00000567977 778 ntBASIC19.34■□□□□ 0.69
SKA1Q96BD8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
SKA1Q96BD8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SKA1Q96BD8 AC073508.3-201ENST00000619697 1419 ntBASIC19.34■□□□□ 0.69
SKA1Q96BD8 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA1Q96BD8 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA1Q96BD8 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.33■□□□□ 0.69
SKA1Q96BD8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.33■□□□□ 0.69
SKA1Q96BD8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
SKA1Q96BD8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA1Q96BD8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA1Q96BD8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SKA1Q96BD8 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 AC011506.1-201ENST00000474329 610 ntBASIC19.33■□□□□ 0.68
SKA1Q96BD8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 LINC01238-205ENST00000567549 1107 ntBASIC19.33■□□□□ 0.68
SKA1Q96BD8 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SKA1Q96BD8 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SKA1Q96BD8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms