Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 pRNA.6-201ENST00000610482 90 ntBASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 pRNA.5-201ENST00000612139 90 ntBASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 pRNA.11-201ENST00000618423 90 ntBASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 pRNA.13-201ENST00000619112 90 ntBASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 KRT8P36-201ENST00000489121 1440 ntBASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN3Q8NCR9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN3Q8NCR9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.08■□□□□ 0
CLRN3Q8NCR9 AC008741.2-201ENST00000612792 3115 ntBASIC15.08■□□□□ 0
CLRN3Q8NCR9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN3Q8NCR9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 AL121761.2-201ENST00000598007 1648 ntBASIC15.07■□□□□ 0
CLRN3Q8NCR9 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 AC239859.2-201ENST00000444165 318 ntBASIC15.07■□□□□ 0
CLRN3Q8NCR9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 MIR4787-201ENST00000607364 84 ntBASIC15.07■□□□□ 0
CLRN3Q8NCR9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms