Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC35.95■■■■□ 3.34
SHROOM4Q9ULL8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC35.95■■■■□ 3.34
SHROOM4Q9ULL8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.34
SHROOM4Q9ULL8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC35.95■■■■□ 3.34
SHROOM4Q9ULL8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC35.94■■■■□ 3.34
SHROOM4Q9ULL8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 AL121772.3-201ENST00000610840 674 ntBASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
SHROOM4Q9ULL8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 KRT18P13-201ENST00000400056 1290 ntBASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 MRPL3P1-201ENST00000400109 1033 ntBASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 PENK-208ENST00000523051 772 ntTSL 5 BASIC35.92■■■■□ 3.34
SHROOM4Q9ULL8 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
SHROOM4Q9ULL8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 HLA-A-201ENST00000376802 1334 ntBASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC35.9■■■■□ 3.34
SHROOM4Q9ULL8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 AL162741.1-201ENST00000565563 1558 ntBASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 AL121912.1-201ENST00000603683 238 ntBASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 TREX1-205ENST00000625293 1783 ntBASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC35.89■■■■□ 3.34
SHROOM4Q9ULL8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 KRT18P31-201ENST00000506277 1292 ntBASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC35.88■■■■□ 3.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms