Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 AC092338.2-201ENST00000568827 1415 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 INGX-201ENST00000359239 846 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 AC007663.1-201ENST00000438948 1240 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 ECEL1P2-202ENST00000465689 757 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 AC010653.2-201ENST00000623505 997 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 IRX1P1-201ENST00000438849 1838 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 AC116562.4-201ENST00000641316 2276 ntBASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM39Q9HCM9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 AC005363.2-201ENST00000618631 242 ntBASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 FP475955.4-201ENST00000623131 1990 ntBASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM39Q9HCM9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM39Q9HCM9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM39Q9HCM9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms