Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.73■■□□□ 1.392e-11■■■□□ 18.6
UPF1Q92900 RAD51-202ENST00000382643 1588 ntTSL 2 BASIC15.62■□□□□ 0.092e-11■■■□□ 18.6
UPF1Q92900 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.385e-6■■■□□ 18.6
UPF1Q92900 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.185e-9■■■□□ 18.6
UPF1Q92900 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.345e-9■■■□□ 18.6
UPF1Q92900 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.552e-7■■■□□ 18.6
UPF1Q92900 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC24.3■■□□□ 1.482e-6■■■□□ 18.6
UPF1Q92900 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.96■■□□□ 1.272e-6■■■□□ 18.6
UPF1Q92900 PML-218ENST00000567606 2042 ntTSL 1 (best)21.84■■□□□ 1.092e-6■■■□□ 18.6
UPF1Q92900 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.042e-6■■■□□ 18.6
UPF1Q92900 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.872e-6■■■□□ 18.6
UPF1Q92900 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.512e-6■■■□□ 18.6
UPF1Q92900 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.162e-6■■■□□ 18.6
UPF1Q92900 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.072e-6■■■□□ 18.6
UPF1Q92900 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.132e-6■■■□□ 18.6
UPF1Q92900 PML-209ENST00000562086 2232 ntTSL 1 (best)13.84□□□□□ -0.192e-6■■■□□ 18.6
UPF1Q92900 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.212e-6■■■□□ 18.6
UPF1Q92900 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.222e-6■■■□□ 18.6
UPF1Q92900 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.382e-6■■■□□ 18.6
UPF1Q92900 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.422e-6■■■□□ 18.6
UPF1Q92900 TXNIP-202ENST00000486597 509 ntTSL 26.91□□□□□ -1.35e-11■■■□□ 18.6
UPF1Q92900 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.731e-7■■■□□ 18.6
UPF1Q92900 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.36□□□□□ -1.231e-7■■■□□ 18.6
UPF1Q92900 LETMD1-221ENST00000550100 1480 ntTSL 216.78■□□□□ 0.283e-9■■■□□ 18.6
UPF1Q92900 NDST1-208ENST00000524161 437 ntTSL 222.53■■□□□ 1.24e-13■■■□□ 18.6
UPF1Q92900 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC8.09□□□□□ -1.112e-9■■■□□ 18.5
UPF1Q92900 ATF7-207ENST00000551087 576 ntTSL 411.54□□□□□ -0.562e-7■■■□□ 18.5
UPF1Q92900 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.049e-8■■■□□ 18.5
UPF1Q92900 PIGQ-216ENST00000634341 1046 nt26.22■■□□□ 1.792e-7■■■□□ 18.5
UPF1Q92900 PIGQ-210ENST00000476438 1775 ntTSL 223.32■■□□□ 1.322e-7■■■□□ 18.5
UPF1Q92900 PIGQ-218ENST00000635909 2212 ntTSL 519.63■□□□□ 0.732e-7■■■□□ 18.5
UPF1Q92900 PIGQ-211ENST00000480424 2202 ntTSL 218.47■□□□□ 0.552e-7■■■□□ 18.5
UPF1Q92900 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.522e-7■■■□□ 18.5
UPF1Q92900 PIGQ-221ENST00000636657 2841 ntTSL 516.97■□□□□ 0.312e-7■■■□□ 18.5
UPF1Q92900 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.24■□□□□ 0.192e-7■■■□□ 18.5
UPF1Q92900 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.771e-7■■■□□ 18.5
UPF1Q92900 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61e-7■■■□□ 18.5
UPF1Q92900 AMMECR1L-202ENST00000393001 4641 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.781e-6■■■□□ 18.5
UPF1Q92900 AMMECR1L-201ENST00000272647 4658 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.991e-6■■■□□ 18.5
UPF1Q92900 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC19.65■□□□□ 0.741e-14■■■□□ 18.5
UPF1Q92900 DPF2-208ENST00000531989 1573 ntTSL 321.39■■□□□ 1.016e-8■■■□□ 18.5
UPF1Q92900 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.536e-8■■■□□ 18.5
UPF1Q92900 DPF2-202ENST00000415073 2085 ntTSL 2 BASIC16.23■□□□□ 0.196e-8■■■□□ 18.5
UPF1Q92900 DPF2-201ENST00000252268 2462 ntTSL 5 BASIC11.45□□□□□ -0.586e-8■■■□□ 18.5
UPF1Q92900 DPF2-209ENST00000532052 3165 ntTSL 29.62□□□□□ -0.876e-8■■■□□ 18.5
UPF1Q92900 DPF2-204ENST00000524666 4840 ntTSL 29.39□□□□□ -0.916e-8■■■□□ 18.5
UPF1Q92900 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC24.99■■□□□ 1.596e-6■■■□□ 18.5
UPF1Q92900 NR1H2-209ENST00000597790 718 ntTSL 224.72■■□□□ 1.556e-6■■■□□ 18.5
UPF1Q92900 NR1H2-205ENST00000595730 713 ntTSL 223.75■■□□□ 1.396e-6■■■□□ 18.5
UPF1Q92900 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.316e-6■■■□□ 18.5
UPF1Q92900 NR1H2-207ENST00000597130 894 ntTSL 322.8■■□□□ 1.246e-6■■■□□ 18.5
UPF1Q92900 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.146e-6■■■□□ 18.5
UPF1Q92900 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.036e-6■■■□□ 18.5
UPF1Q92900 NR1H2-212ENST00000600355 507 ntTSL 320.45■□□□□ 0.866e-6■■■□□ 18.5
UPF1Q92900 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.771e-8■■■□□ 18.5
UPF1Q92900 NR1H2-203ENST00000593532 2380 ntTSL 217.28■□□□□ 0.366e-6■■■□□ 18.5
UPF1Q92900 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.121e-8■■■□□ 18.5
UPF1Q92900 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.089e-7■■■□□ 18.5
UPF1Q92900 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.181e-8■■■□□ 18.5
UPF1Q92900 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC12.18□□□□□ -0.461e-8■■■□□ 18.5
UPF1Q92900 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC11.54□□□□□ -0.561e-8■■■□□ 18.5
UPF1Q92900 NT5DC3-203ENST00000447799 2172 ntTSL 29.9□□□□□ -0.831e-8■■■□□ 18.5
UPF1Q92900 KBTBD11-OT1-205ENST00000636175 2039 ntAPPRIS ALT2 TSL 520.14■□□□□ 0.811e-6■■■□□ 18.5
UPF1Q92900 CLN8-209ENST00000635970 1958 ntTSL 520.03■□□□□ 0.81e-6■■■□□ 18.5
UPF1Q92900 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.92■□□□□ 0.781e-6■■■□□ 18.5
UPF1Q92900 KBTBD11-OT1-203ENST00000635773 5844 ntAPPRIS ALT2 TSL 513.05□□□□□ -0.321e-6■■■□□ 18.5
UPF1Q92900 CLN8-201ENST00000331222 7169 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.731e-6■■■□□ 18.5
UPF1Q92900 KBTBD11-OT1-204ENST00000635855 6169 ntAPPRIS P5 TSL 5 BASIC9.66□□□□□ -0.861e-6■■■□□ 18.5
UPF1Q92900 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)15.85■□□□□ 0.138e-12■■■□□ 18.5
UPF1Q92900 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.118e-12■■■□□ 18.5
UPF1Q92900 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC29.68■■■□□ 2.345e-7■■■□□ 18.5
UPF1Q92900 TMEM94-202ENST00000375248 4703 ntTSL 2 BASIC11.97□□□□□ -0.493e-6■■■□□ 18.5
UPF1Q92900 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.733e-7■■■□□ 18.5
UPF1Q92900 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC23.37■■□□□ 1.332e-6■■■□□ 18.5
UPF1Q92900 OAZ1-206ENST00000589739 657 ntTSL 223.58■■□□□ 1.375e-18■■■□□ 18.5
UPF1Q92900 SLC7A6-201ENST00000219343 6251 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.732e-8■■■□□ 18.5
UPF1Q92900 SLC7A6-202ENST00000379152 5074 ntTSL 1 (best)8.8□□□□□ -12e-8■■■□□ 18.5
UPF1Q92900 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC8.17□□□□□ -1.12e-8■■■□□ 18.5
UPF1Q92900 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.162e-8■■■□□ 18.5
UPF1Q92900 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.54■□□□□ 0.563e-13■■■□□ 18.5
UPF1Q92900 HNF4A-201ENST00000316099 6445 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.62e-7■■■□□ 18.5
UPF1Q92900 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC10.94□□□□□ -0.662e-7■■■□□ 18.5
UPF1Q92900 HDAC5-205ENST00000587135 504 ntTSL 227.28■■□□□ 1.963e-7■■■□□ 18.5
UPF1Q92900 HDAC5-209ENST00000588703 445 ntTSL 325.82■■□□□ 1.723e-7■■■□□ 18.5
UPF1Q92900 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC24.41■■□□□ 1.52e-7■■■□□ 18.5
UPF1Q92900 SLC39A11-208ENST00000579988 910 ntTSL 325.8■■□□□ 1.724e-7■■■□□ 18.5
UPF1Q92900 AC068234.1-201ENST00000560629 2785 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -09e-7■■■□□ 18.5
UPF1Q92900 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.169e-7■■■□□ 18.5
UPF1Q92900 PDPR-208ENST00000567046 1207 ntTSL 2 BASIC13.56□□□□□ -0.242e-9■■■□□ 18.4
UPF1Q92900 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.751e-6■■■□□ 18.4
UPF1Q92900 PIK3R2-205ENST00000474310 425 ntTSL 327.55■■■□□ 24e-7■■■□□ 18.4
UPF1Q92900 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.159e-8■■■□□ 18.4
UPF1Q92900 MRM2-204ENST00000467199 1819 ntTSL 221.03■□□□□ 0.969e-8■■■□□ 18.4
UPF1Q92900 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.579e-8■■■□□ 18.4
UPF1Q92900 MRM2-205ENST00000486040 2511 ntTSL 1 (best)14.25□□□□□ -0.139e-8■■■□□ 18.4
UPF1Q92900 SLC12A4-206ENST00000570802 3761 ntTSL 212.31□□□□□ -0.445e-9■■■□□ 18.4
UPF1Q92900 SLC12A4-219ENST00000576616 3768 ntTSL 2 BASIC12.31□□□□□ -0.445e-9■■■□□ 18.4
UPF1Q92900 SLC12A4-204ENST00000541864 3627 ntTSL 2 BASIC12.12□□□□□ -0.475e-9■■■□□ 18.4
UPF1Q92900 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.462e-6■■■□□ 18.4
UPF1Q92900 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.452e-6■■■□□ 18.4
Retrieved 100 of 15,879 protein–RNA pairs in 104.9 ms