Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SH3RF1Q7Z6J0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.7■■□□□ 1.06
SH3RF1Q7Z6J0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SH3RF1Q7Z6J0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.7■■□□□ 1.06
SH3RF1Q7Z6J0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.7■■□□□ 1.06
SH3RF1Q7Z6J0 AL049812.1-201ENST00000432563 2267 ntBASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 AC007663.1-201ENST00000438948 1240 ntBASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 CLEC4GP1-201ENST00000596555 870 ntBASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SH3RF1Q7Z6J0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SH3RF1Q7Z6J0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 HCG4P8-203ENST00000443049 980 ntBASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SH3RF1Q7Z6J0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 CCR12P-201ENST00000446203 998 ntBASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 CROCCP3-202ENST00000420820 1947 ntBASIC21.66■■□□□ 1.06
SH3RF1Q7Z6J0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms