Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PTPN4P29074 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19■□□□□ 0.63
PTPN4P29074 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19■□□□□ 0.63
PTPN4P29074 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19■□□□□ 0.63
PTPN4P29074 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19■□□□□ 0.63
PTPN4P29074 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN4P29074 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 Z98044.1-201ENST00000632503 1764 ntBASIC18.99■□□□□ 0.63
PTPN4P29074 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.99■□□□□ 0.63
PTPN4P29074 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 AC233702.5-201ENST00000584107 538 ntBASIC18.99■□□□□ 0.63
PTPN4P29074 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 AC110285.5-201ENST00000611501 352 ntBASIC18.99■□□□□ 0.63
PTPN4P29074 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.99■□□□□ 0.63
PTPN4P29074 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN4P29074 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN4P29074 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 AC093525.10-201ENST00000625130 1569 ntBASIC18.98■□□□□ 0.63
PTPN4P29074 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 AC138932.1-201ENST00000534164 6830 ntBASIC18.98■□□□□ 0.63
PTPN4P29074 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 RPS2P55-201ENST00000397318 883 ntBASIC18.98■□□□□ 0.63
PTPN4P29074 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 AC107956.1-201ENST00000494359 873 ntBASIC18.98■□□□□ 0.63
PTPN4P29074 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
PTPN4P29074 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN4P29074 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
PTPN4P29074 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN4P29074 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.97■□□□□ 0.63
PTPN4P29074 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 KRASP1-201ENST00000407852 552 ntBASIC18.97■□□□□ 0.63
PTPN4P29074 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms