Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ZNF540Q8NDQ6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 AC097658.1-201ENST00000475555 843 ntBASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 AC016405.3-201ENST00000607710 860 ntBASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ZNF540Q8NDQ6 PKD1P1-201ENST00000458669 6805 ntBASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 BX276092.2-201ENST00000417668 665 ntBASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 RARRES2P4-201ENST00000514074 484 ntBASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ZNF540Q8NDQ6 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ZNF540Q8NDQ6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms