Protein–RNA interactions for Protein: P52298

NCBP2, Nuclear cap-binding protein subunit 2, humanhuman

Known RBP eCLIP

Length 156 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP2P52298 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.988e-6■■□□□ 13
NCBP2P52298 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC8.78□□□□□ -18e-6■■□□□ 13
NCBP2P52298 RPL9-205ENST00000503277 769 ntTSL 28.33□□□□□ -1.088e-6■■□□□ 13
NCBP2P52298 RPS3-207ENST00000526608 710 ntTSL 5 BASIC8.03□□□□□ -1.128e-6■■□□□ 13
NCBP2P52298 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC7.97□□□□□ -1.138e-6■■□□□ 13
NCBP2P52298 MSH5-205ENST00000395853 2704 ntTSL 2 BASIC7.58□□□□□ -1.28e-6■■□□□ 13
NCBP2P52298 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.228e-6■■□□□ 13
NCBP2P52298 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC6.58□□□□□ -1.368e-6■■□□□ 13
NCBP2P52298 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.572e-8■■□□□ 13
NCBP2P52298 RPL9-209ENST00000511075 1028 ntTSL 24.67□□□□□ -1.666e-9■■□□□ 13
NCBP2P52298 EIF3M-207ENST00000530026 769 ntTSL 23.98□□□□□ -1.772e-8■■□□□ 13
NCBP2P52298 ATP5C1-207ENST00000472202 782 ntTSL 23.61□□□□□ -1.838e-6■■□□□ 13
NCBP2P52298 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.886e-9■■□□□ 13
NCBP2P52298 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.883e-6■■□□□ 13
NCBP2P52298 RPL9-202ENST00000437992 579 ntTSL 43.19□□□□□ -1.96e-9■■□□□ 13
NCBP2P52298 RPL9-208ENST00000508595 667 ntTSL 33.18□□□□□ -1.96e-9■■□□□ 13
NCBP2P52298 RPL9-204ENST00000503040 571 ntTSL 42.51□□□□□ -2.016e-9■■□□□ 13
NCBP2P52298 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.048e-6■■□□□ 13
NCBP2P52298 MXD1-202ENST00000409442 982 ntTSL 220.27■□□□□ 0.843e-6■■□□□ 13
NCBP2P52298 MXD1-203ENST00000410000 598 ntTSL 219■□□□□ 0.633e-6■■□□□ 13
NCBP2P52298 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.153e-6■■□□□ 13
NCBP2P52298 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.44□□□□□ -0.13e-6■■□□□ 13
NCBP2P52298 MXD1-204ENST00000435990 860 ntTSL 311.45□□□□□ -0.583e-6■■□□□ 13
NCBP2P52298 USP36-205ENST00000586531 898 ntTSL 325.31■■□□□ 1.641e-6■■□□□ 13
NCBP2P52298 PPP2R3B-203ENST00000445792 1998 ntTSL 225.18■■□□□ 1.621e-6■■□□□ 13
NCBP2P52298 TAOK3-216ENST00000542532 641 ntTSL 224.33■■□□□ 1.491e-6■■□□□ 13
NCBP2P52298 FEZ2-210ENST00000451623 1869 ntTSL 1 (best)23.19■■□□□ 1.31e-6■■□□□ 13
NCBP2P52298 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.11■■□□□ 1.291e-6■■□□□ 13
NCBP2P52298 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.231e-6■■□□□ 13
NCBP2P52298 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.131e-6■■□□□ 13
NCBP2P52298 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.042e-9■■□□□ 13
NCBP2P52298 TAOK3-217ENST00000542692 588 ntTSL 321.42■■□□□ 1.021e-6■■□□□ 13
NCBP2P52298 USP36-224ENST00000592907 543 ntTSL 221.39■■□□□ 1.011e-6■■□□□ 13
NCBP2P52298 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.2■□□□□ 0.991e-6■■□□□ 13
NCBP2P52298 POLI-214ENST00000583136 1204 ntTSL 321.19■□□□□ 0.981e-6■■□□□ 13
NCBP2P52298 USP36-209ENST00000587783 679 ntTSL 320.51■□□□□ 0.871e-6■■□□□ 13
NCBP2P52298 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.831e-6■■□□□ 13
NCBP2P52298 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.811e-6■■□□□ 13
NCBP2P52298 USP36-220ENST00000591942 564 ntTSL 519.94■□□□□ 0.781e-6■■□□□ 13
NCBP2P52298 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.721e-6■■□□□ 13
NCBP2P52298 C15orf40-203ENST00000505341 1881 ntTSL 219.44■□□□□ 0.71e-6■■□□□ 13
NCBP2P52298 USP36-212ENST00000588365 546 ntTSL 419.44■□□□□ 0.71e-6■■□□□ 13
NCBP2P52298 FDX2-203ENST00000453681 635 ntTSL 219.3■□□□□ 0.681e-6■■□□□ 13
NCBP2P52298 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.642e-9■■□□□ 13
NCBP2P52298 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.591e-6■■□□□ 13
NCBP2P52298 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.52■□□□□ 0.561e-6■■□□□ 13
NCBP2P52298 DUSP9-203ENST00000477033 430 ntTSL 318.46■□□□□ 0.551e-6■■□□□ 13
NCBP2P52298 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.25■□□□□ 0.511e-6■■□□□ 13
NCBP2P52298 ATPAF2-212ENST00000584205 1298 ntTSL 218.05■□□□□ 0.481e-6■■□□□ 13
NCBP2P52298 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.471e-6■■□□□ 13
NCBP2P52298 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.96■□□□□ 0.471e-6■■□□□ 13
NCBP2P52298 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.77■□□□□ 0.441e-6■■□□□ 13
NCBP2P52298 FDX2-201ENST00000343376 614 ntTSL 317.62■□□□□ 0.411e-6■■□□□ 13
NCBP2P52298 ATPAF2-201ENST00000444058 685 ntTSL 317.24■□□□□ 0.351e-6■■□□□ 13
NCBP2P52298 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.21■□□□□ 0.352e-9■■□□□ 13
NCBP2P52298 TAF1B-203ENST00000404869 505 ntTSL 517.21■□□□□ 0.351e-6■■□□□ 13
NCBP2P52298 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.05■□□□□ 0.321e-6■■□□□ 13
NCBP2P52298 FDX2-205ENST00000486454 584 ntTSL 316.95■□□□□ 0.31e-6■■□□□ 13
NCBP2P52298 ATPAF2-202ENST00000462733 1737 ntTSL 1 (best)16.74■□□□□ 0.271e-6■■□□□ 13
NCBP2P52298 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.262e-9■■□□□ 13
NCBP2P52298 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.251e-6■■□□□ 13
NCBP2P52298 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.52■□□□□ 0.242e-9■■□□□ 13
NCBP2P52298 DUSP12-204ENST00000484291 1252 ntTSL 516.51■□□□□ 0.231e-6■■□□□ 13
NCBP2P52298 ATPAF2-209ENST00000497871 633 ntTSL 216.46■□□□□ 0.231e-6■■□□□ 13
NCBP2P52298 POLI-206ENST00000577971 2536 ntTSL 216.33■□□□□ 0.21e-6■■□□□ 13
NCBP2P52298 LONP1-211ENST00000590558 2884 ntTSL 516.32■□□□□ 0.22e-9■■□□□ 13
NCBP2P52298 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.2■□□□□ 0.182e-9■■□□□ 13
NCBP2P52298 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.19■□□□□ 0.181e-6■■□□□ 13
NCBP2P52298 MELTF-203ENST00000439320 629 ntTSL 316.15■□□□□ 0.181e-6■■□□□ 13
NCBP2P52298 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.11■□□□□ 0.171e-6■■□□□ 13
NCBP2P52298 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.161e-6■■□□□ 13
NCBP2P52298 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.141e-6■■□□□ 13
NCBP2P52298 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.141e-6■■□□□ 13
NCBP2P52298 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.12e-9■■□□□ 13
NCBP2P52298 TMEM205-214ENST00000591677 628 ntTSL 215.66■□□□□ 0.12e-9■■□□□ 13
NCBP2P52298 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.092e-9■■□□□ 13
NCBP2P52298 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.091e-6■■□□□ 13
NCBP2P52298 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.53■□□□□ 0.082e-9■■□□□ 13
NCBP2P52298 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.072e-9■■□□□ 13
NCBP2P52298 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.35■□□□□ 0.052e-9■■□□□ 13
NCBP2P52298 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.021e-6■■□□□ 13
NCBP2P52298 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -02e-9■■□□□ 13
NCBP2P52298 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -02e-9■■□□□ 13
NCBP2P52298 C15orf40-212ENST00000565725 541 ntTSL 215.01□□□□□ -0.011e-6■■□□□ 13
NCBP2P52298 STX3-205ENST00000530498 690 ntTSL 214.94□□□□□ -0.021e-6■■□□□ 13
NCBP2P52298 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.021e-6■■□□□ 13
NCBP2P52298 BCL2L12-209ENST00000601168 416 ntTSL 214.89□□□□□ -0.032e-9■■□□□ 13
NCBP2P52298 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.83□□□□□ -0.032e-9■■□□□ 13
NCBP2P52298 ATPAF2-210ENST00000577586 551 ntTSL 414.83□□□□□ -0.041e-6■■□□□ 13
NCBP2P52298 DUSP12-203ENST00000464004 740 ntTSL 214.77□□□□□ -0.051e-6■■□□□ 13
NCBP2P52298 DUSP12-205ENST00000490591 657 ntTSL 514.74□□□□□ -0.051e-6■■□□□ 13
NCBP2P52298 CTDSP1-209ENST00000488627 1118 ntTSL 314.64□□□□□ -0.071e-11■■□□□ 13
NCBP2P52298 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.092e-9■■□□□ 13
NCBP2P52298 FDX2-204ENST00000460631 777 ntTSL 514.48□□□□□ -0.091e-6■■□□□ 13
NCBP2P52298 STX3-206ENST00000533637 1024 ntTSL 214.17□□□□□ -0.141e-6■■□□□ 13
NCBP2P52298 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.141e-6■■□□□ 13
NCBP2P52298 USP36-214ENST00000589225 5885 ntTSL 1 (best)14.1□□□□□ -0.151e-6■■□□□ 13
NCBP2P52298 GAPDH-210ENST00000496049 390 ntTSL 214.08□□□□□ -0.161e-6■■□□□ 13
NCBP2P52298 GAPDH-206ENST00000466525 1720 ntTSL 514.03□□□□□ -0.161e-6■■□□□ 13
NCBP2P52298 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.172e-9■■□□□ 13
Retrieved 100 of 18,329 protein–RNA pairs in 323.2 ms