Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
MSH4O15457 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
MSH4O15457 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
MSH4O15457 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.3■■□□□ 1
MSH4O15457 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.3■■□□□ 1
MSH4O15457 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.3■■□□□ 1
MSH4O15457 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.3■■□□□ 1
MSH4O15457 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.3■■□□□ 1
MSH4O15457 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
MSH4O15457 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH4O15457 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
MSH4O15457 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
MSH4O15457 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.29■■□□□ 1
MSH4O15457 TMPOP1-202ENST00000424642 1267 ntBASIC21.29■■□□□ 1
MSH4O15457 LIN28AP1-201ENST00000429574 405 ntBASIC21.29■■□□□ 1
MSH4O15457 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.29■■□□□ 1
MSH4O15457 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.29■■□□□ 1
MSH4O15457 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.29■■□□□ 1
MSH4O15457 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.29■■□□□ 1
MSH4O15457 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.29■■□□□ 1
MSH4O15457 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.29■■□□□ 1
MSH4O15457 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.29■■□□□ 1
MSH4O15457 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH4O15457 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
MSH4O15457 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.28■■□□□ 1
MSH4O15457 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
MSH4O15457 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.28■■□□□ 1
MSH4O15457 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.28■■□□□ 1
MSH4O15457 CR769767.2-201ENST00000622735 460 ntBASIC21.28■■□□□ 1
MSH4O15457 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
MSH4O15457 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.28■■□□□ 1
MSH4O15457 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.28■■□□□ 1
MSH4O15457 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.28■■□□□ 1
MSH4O15457 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH4O15457 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
MSH4O15457 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.27■■□□□ 1
MSH4O15457 KRT8P32-201ENST00000512863 1461 ntBASIC21.27■■□□□ 1
MSH4O15457 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.27■■□□□ 1
MSH4O15457 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.27■■□□□ 1
MSH4O15457 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.27■■□□□ 1
MSH4O15457 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
MSH4O15457 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.27■■□□□ 1
MSH4O15457 ATP5G1P1-201ENST00000448724 379 ntBASIC21.27■■□□□ 1
MSH4O15457 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.27■■□□□ 1
MSH4O15457 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
MSH4O15457 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.27■■□□□ 1
MSH4O15457 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH4O15457 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
MSH4O15457 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
MSH4O15457 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
MSH4O15457 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
MSH4O15457 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
MSH4O15457 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
MSH4O15457 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH4O15457 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 RCC2P3-201ENST00000418112 1537 ntBASIC21.26■□□□□ 0.99
MSH4O15457 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms