Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TCRBV7S3A2A0A539 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 KRT18P6-201ENST00000555540 1265 ntBASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TCRBV7S3A2A0A539 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 AC239809.2-201ENST00000415381 517 ntBASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 AC126763.1-201ENST00000552015 2118 ntBASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 AC124016.1-201ENST00000609552 612 ntBASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TCRBV7S3A2A0A539 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 ESRRAP1-201ENST00000400596 1257 ntBASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 KRT16P5-201ENST00000455284 522 ntBASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TCRBV7S3A2A0A539 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms