Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 AC055733.4-201ENST00000638462 1354 ntBASIC11.9□□□□□ -0.5
LINC00643Q86TS7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LINC00643Q86TS7 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC11.9□□□□□ -0.51
LINC00643Q86TS7 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00643Q86TS7 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
LINC00643Q86TS7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 PGR-209ENST00000617858 2816 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 AL136379.1-201ENST00000623471 2642 ntBASIC11.89□□□□□ -0.51
LINC00643Q86TS7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 LINC01971-201ENST00000617888 1048 ntBASIC11.89□□□□□ -0.51
LINC00643Q86TS7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LINC00643Q86TS7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 AC005052.1-201ENST00000625181 2492 ntBASIC11.88□□□□□ -0.51
LINC00643Q86TS7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 UBALD1-205ENST00000590891 2641 ntBASIC11.88□□□□□ -0.51
LINC00643Q86TS7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 RAP2CP1-202ENST00000605179 643 ntBASIC11.88□□□□□ -0.51
LINC00643Q86TS7 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LINC00643Q86TS7 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms