Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.34■□□□□ 0.21
ABCA4P78363 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA4P78363 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA4P78363 KRT17P6-201ENST00000453795 1220 ntBASIC16.34■□□□□ 0.21
ABCA4P78363 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA4P78363 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.34■□□□□ 0.21
ABCA4P78363 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA4P78363 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.34■□□□□ 0.21
ABCA4P78363 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
ABCA4P78363 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ABCA4P78363 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
ABCA4P78363 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.33■□□□□ 0.2
ABCA4P78363 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
ABCA4P78363 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ABCA4P78363 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.33■□□□□ 0.2
ABCA4P78363 SEC1P-202ENST00000473944 940 ntBASIC16.33■□□□□ 0.2
ABCA4P78363 UNC93B7-201ENST00000509439 705 ntBASIC16.33■□□□□ 0.2
ABCA4P78363 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.33■□□□□ 0.2
ABCA4P78363 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
ABCA4P78363 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
ABCA4P78363 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 GPAT2P1-201ENST00000444924 1672 ntBASIC16.32■□□□□ 0.2
ABCA4P78363 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 AC009078.2-202ENST00000463353 338 ntBASIC16.32■□□□□ 0.2
ABCA4P78363 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.32■□□□□ 0.2
ABCA4P78363 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.32■□□□□ 0.2
ABCA4P78363 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ABCA4P78363 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
ABCA4P78363 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ABCA4P78363 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ABCA4P78363 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.32■□□□□ 0.2
ABCA4P78363 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
ABCA4P78363 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.31■□□□□ 0.2
ABCA4P78363 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ABCA4P78363 RASA4DP-201ENST00000460726 1199 ntBASIC16.31■□□□□ 0.2
ABCA4P78363 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 AC034232.1-201ENST00000506026 1064 ntBASIC16.31■□□□□ 0.2
ABCA4P78363 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ABCA4P78363 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ABCA4P78363 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.31■□□□□ 0.2
ABCA4P78363 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ABCA4P78363 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ABCA4P78363 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.31■□□□□ 0.2
ABCA4P78363 SDHAP1-207ENST00000440850 2000 ntBASIC16.31■□□□□ 0.2
ABCA4P78363 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ABCA4P78363 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms