Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 LETM1P2-201ENST00000597330 2178 ntBASIC17.87■□□□□ 0.45
SOX3P41225 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SOX3P41225 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.87■□□□□ 0.45
SOX3P41225 RBM17P1-201ENST00000453646 1190 ntBASIC17.87■□□□□ 0.45
SOX3P41225 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.87■□□□□ 0.45
SOX3P41225 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.87■□□□□ 0.45
SOX3P41225 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SOX3P41225 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.87■□□□□ 0.45
SOX3P41225 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SOX3P41225 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SOX3P41225 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.86■□□□□ 0.45
SOX3P41225 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.86■□□□□ 0.45
SOX3P41225 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.86■□□□□ 0.45
SOX3P41225 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 MIR6786-201ENST00000616843 113 ntBASIC17.86■□□□□ 0.45
SOX3P41225 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.86■□□□□ 0.45
SOX3P41225 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SOX3P41225 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SOX3P41225 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.86■□□□□ 0.45
SOX3P41225 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 AC138932.1-201ENST00000534164 6830 ntBASIC17.85■□□□□ 0.45
SOX3P41225 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 UNC93B2-201ENST00000285383 730 ntBASIC17.85■□□□□ 0.45
SOX3P41225 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 LINC01465-201ENST00000408887 1940 ntBASIC17.85■□□□□ 0.45
SOX3P41225 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SOX3P41225 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 AP000525.1-201ENST00000608286 694 ntBASIC17.85■□□□□ 0.45
SOX3P41225 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SOX3P41225 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SOX3P41225 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SOX3P41225 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
SOX3P41225 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
SOX3P41225 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SOX3P41225 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 AC079598.2-202ENST00000546624 1451 ntBASIC17.84■□□□□ 0.45
SOX3P41225 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 FSCN1P1-201ENST00000568912 1481 ntBASIC17.84■□□□□ 0.45
SOX3P41225 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SOX3P41225 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SOX3P41225 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SOX3P41225 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 MESTP1-201ENST00000404287 994 ntBASIC17.84■□□□□ 0.45
SOX3P41225 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 B3GAT3P1-201ENST00000471720 806 ntBASIC17.84■□□□□ 0.45
SOX3P41225 AC011506.1-201ENST00000474329 610 ntBASIC17.84■□□□□ 0.45
SOX3P41225 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SOX3P41225 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.84■□□□□ 0.45
SOX3P41225 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.84■□□□□ 0.45
SOX3P41225 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms