Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL13-212ENST00000563749 2367 nt22.87■■□□□ 1.253e-64■■□□□ 14.2
YBX3P16989 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.013e-64■■□□□ 14.2
YBX3P16989 RPL13-210ENST00000562879 958 ntTSL 1 (best)20.09■□□□□ 0.813e-64■■□□□ 14.2
YBX3P16989 RPL13-211ENST00000563270 554 ntTSL 419.58■□□□□ 0.723e-64■■□□□ 14.2
YBX3P16989 RPL13-207ENST00000484610 924 ntTSL 519.31■□□□□ 0.683e-64■■□□□ 14.2
YBX3P16989 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.69■□□□□ 0.423e-64■■□□□ 14.2
YBX3P16989 RPL13-201ENST00000311528 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.33e-64■■□□□ 14.2
YBX3P16989 EPRS-202ENST00000464052 770 ntTSL 28.81□□□□□ -15e-9■■□□□ 14.2
YBX3P16989 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.17■■□□□ 1.142e-6■■□□□ 14.1
YBX3P16989 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.95■□□□□ 0.942e-6■■□□□ 14.1
YBX3P16989 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC18.17■□□□□ 0.52e-6■■□□□ 14.1
YBX3P16989 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.67■□□□□ 0.422e-6■■□□□ 14.1
YBX3P16989 H2AFY-211ENST00000507868 861 ntTSL 231.61■■■□□ 2.658e-8■■□□□ 14.1
YBX3P16989 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.61■■■□□ 2.658e-8■■□□□ 14.1
YBX3P16989 H2AFY-212ENST00000508120 536 ntTSL 330.37■■■□□ 2.458e-8■■□□□ 14.1
YBX3P16989 H2AFY-213ENST00000508785 966 ntTSL 220.52■□□□□ 0.888e-8■■□□□ 14.1
YBX3P16989 H2AFY-219ENST00000513210 775 ntTSL 215.88■□□□□ 0.138e-8■■□□□ 14.1
YBX3P16989 H2AFY-215ENST00000510038 1314 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.328e-8■■□□□ 14.1
YBX3P16989 EPB41L1-214ENST00000451082 803 ntTSL 517.4■□□□□ 0.386e-7■■□□□ 14.1
YBX3P16989 POLR2E-209ENST00000591767 1214 ntTSL 224.21■■□□□ 1.472e-7■■□□□ 14.1
YBX3P16989 POLR2E-205ENST00000586817 2441 ntTSL 223.79■■□□□ 1.42e-7■■□□□ 14.1
YBX3P16989 POLR2E-206ENST00000589737 1105 ntTSL 220.99■□□□□ 0.952e-7■■□□□ 14.1
YBX3P16989 POLR2E-201ENST00000215587 1286 ntTSL 320.28■□□□□ 0.842e-7■■□□□ 14.1
YBX3P16989 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.552e-7■■□□□ 14.1
YBX3P16989 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.232e-7■■□□□ 14.1
YBX3P16989 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.092e-7■■□□□ 14.1
YBX3P16989 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.453e-8■■□□□ 14.1
YBX3P16989 VCP-207ENST00000493886 2942 ntTSL 214.78□□□□□ -0.041e-10■■□□□ 14.1
YBX3P16989 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.161e-10■■□□□ 14.1
YBX3P16989 VCP-205ENST00000479300 559 ntTSL 1 (best)9.5□□□□□ -0.891e-10■■□□□ 14.1
YBX3P16989 UBR4-201ENST00000375218 4031 ntTSL 2 BASIC8.99□□□□□ -0.971e-8■■□□□ 14.1
YBX3P16989 COPS6-209ENST00000483891 734 ntTSL 38.32□□□□□ -1.081e-6■■□□□ 14.1
YBX3P16989 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.212e-6■■□□□ 14.1
YBX3P16989 COASY-201ENST00000393818 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.082e-6■■□□□ 14.1
YBX3P16989 PSME3-204ENST00000543428 956 ntTSL 228.7■■■□□ 2.181e-6■■□□□ 14.1
YBX3P16989 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 21e-6■■□□□ 14.1
YBX3P16989 PSME3-213ENST00000592169 826 ntTSL 3 BASIC16.96■□□□□ 0.311e-6■■□□□ 14.1
YBX3P16989 EMP2-202ENST00000359543 5197 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.513e-7■■□□□ 14.1
YBX3P16989 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.846e-7■■□□□ 14.1
YBX3P16989 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.03■□□□□ 0.86e-7■■□□□ 14.1
YBX3P16989 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.29■□□□□ 0.526e-7■■□□□ 14.1
YBX3P16989 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC27.36■■□□□ 1.975e-10■■□□□ 14.1
YBX3P16989 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.88■■□□□ 1.575e-10■■□□□ 14.1
YBX3P16989 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.7■□□□□ 0.95e-10■■□□□ 14.1
YBX3P16989 BCAT2-205ENST00000595376 2254 ntTSL 219.31■□□□□ 0.685e-10■■□□□ 14.1
YBX3P16989 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.395e-10■■□□□ 14.1
YBX3P16989 BCAT2-204ENST00000593515 1664 ntTSL 517.5■□□□□ 0.395e-10■■□□□ 14.1
YBX3P16989 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.85■□□□□ 0.295e-10■■□□□ 14.1
YBX3P16989 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.38■□□□□ 0.215e-10■■□□□ 14.1
YBX3P16989 ID3-203ENST00000486541 892 ntTSL 1 (best)25.01■■□□□ 1.592e-12■■□□□ 14.1
YBX3P16989 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC16.93■□□□□ 0.34e-17■■□□□ 14.1
YBX3P16989 BTF3-201ENST00000335895 897 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.54e-17■■□□□ 14.1
YBX3P16989 BTF3-204ENST00000508901 954 ntTSL 29.09□□□□□ -0.954e-17■■□□□ 14.1
YBX3P16989 BTF3-209ENST00000514505 740 ntTSL 57.49□□□□□ -1.214e-17■■□□□ 14.1
YBX3P16989 BTF3-208ENST00000514360 1177 ntTSL 27.43□□□□□ -1.224e-17■■□□□ 14.1
YBX3P16989 TBC1D14-204ENST00000439515 602 ntTSL 514.57□□□□□ -0.087e-8■■□□□ 14.1
YBX3P16989 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.26□□□□□ -1.731e-12■■□□□ 14.1
YBX3P16989 SKP1-204ENST00000517691 2033 ntTSL 1 (best)4.05□□□□□ -1.761e-12■■□□□ 14.1
YBX3P16989 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC7.93□□□□□ -1.143e-8■■□□□ 14.1
YBX3P16989 KCTD20-201ENST00000265344 1339 ntTSL 224.71■■□□□ 1.554e-7■■□□□ 14.1
YBX3P16989 KCTD20-206ENST00000474988 1618 ntTSL 223.15■■□□□ 1.34e-7■■□□□ 14.1
YBX3P16989 KCTD20-207ENST00000481911 1494 ntTSL 220.74■□□□□ 0.914e-7■■□□□ 14.1
YBX3P16989 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.45■□□□□ 0.544e-7■■□□□ 14.1
YBX3P16989 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.374e-7■■□□□ 14.1
YBX3P16989 KCTD20-204ENST00000449081 4094 ntTSL 1 (best) BASIC12.36□□□□□ -0.434e-7■■□□□ 14.1
YBX3P16989 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.512e-6■■□□□ 14.1
YBX3P16989 SLC7A2-206ENST00000640220 2068 ntTSL 1 (best)13.68□□□□□ -0.222e-6■■□□□ 14.1
YBX3P16989 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.293e-7■■□□□ 14.1
YBX3P16989 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.073e-7■■□□□ 14.1
YBX3P16989 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.37□□□□□ -0.273e-7■■□□□ 14.1
YBX3P16989 KIAA1191-203ENST00000393728 2243 ntTSL 1 (best)12.88□□□□□ -0.353e-7■■□□□ 14.1
YBX3P16989 KIAA1191-212ENST00000614420 2631 ntTSL 5 BASIC11.54□□□□□ -0.563e-7■■□□□ 14.1
YBX3P16989 KIAA1191-213ENST00000620366 2452 ntTSL 3 BASIC11.51□□□□□ -0.573e-7■■□□□ 14.1
YBX3P16989 GTF3A-207ENST00000482655 829 ntTSL 26.24□□□□□ -1.414e-8■■□□□ 14.1
YBX3P16989 PI4KA-209ENST00000477245 3026 ntTSL 1 (best)13.77□□□□□ -0.29e-7■■□□□ 14.1
YBX3P16989 SLC25A15-204ENST00000478827 1142 ntTSL 534.71■■■■□ 3.154e-8■■□□□ 14.1
YBX3P16989 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.884e-8■■□□□ 14.1
YBX3P16989 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.14■■■□□ 2.264e-8■■□□□ 14.1
YBX3P16989 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.164e-8■■□□□ 14.1
YBX3P16989 GALK1-208ENST00000592494 1121 ntTSL 526.26■■□□□ 1.794e-8■■□□□ 14.1
YBX3P16989 GALK1-206ENST00000589030 866 ntTSL 226.24■■□□□ 1.794e-8■■□□□ 14.1
YBX3P16989 GALK1-202ENST00000586244 1180 ntTSL 1 (best)26.21■■□□□ 1.794e-8■■□□□ 14.1
YBX3P16989 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC25.7■■□□□ 1.74e-8■■□□□ 14.1
YBX3P16989 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.464e-8■■□□□ 14.1
YBX3P16989 RTCA-204ENST00000483474 683 ntTSL 322.86■■□□□ 1.254e-8■■□□□ 14.1
YBX3P16989 RTCA-205ENST00000498617 731 ntTSL 522.86■■□□□ 1.254e-8■■□□□ 14.1
YBX3P16989 GALK1-204ENST00000587707 667 ntTSL 520.56■□□□□ 0.884e-8■■□□□ 14.1
YBX3P16989 RNF14-206ENST00000502341 684 ntTSL 219.3■□□□□ 0.684e-8■■□□□ 14.1
YBX3P16989 RNF14-215ENST00000514620 562 ntTSL 418.94■□□□□ 0.624e-8■■□□□ 14.1
YBX3P16989 RNF14-209ENST00000506938 582 ntTSL 218.08■□□□□ 0.484e-8■■□□□ 14.1
YBX3P16989 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.414e-8■■□□□ 14.1
YBX3P16989 CDK7-212ENST00000515180 486 ntTSL 317.33■□□□□ 0.364e-8■■□□□ 14.1
YBX3P16989 RNF14-210ENST00000507163 815 ntTSL 216.71■□□□□ 0.274e-8■■□□□ 14.1
YBX3P16989 CDK7-205ENST00000506789 477 ntTSL 516.15■□□□□ 0.184e-8■■□□□ 14.1
YBX3P16989 RNF14-208ENST00000506822 667 ntTSL 515.86■□□□□ 0.134e-8■■□□□ 14.1
YBX3P16989 RNF14-212ENST00000511961 938 ntTSL 315.86■□□□□ 0.134e-8■■□□□ 14.1
YBX3P16989 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.064e-8■■□□□ 14.1
YBX3P16989 SLC25A15-202ENST00000417731 468 ntTSL 513.95□□□□□ -0.184e-8■■□□□ 14.1
YBX3P16989 SLC25A15-203ENST00000470509 511 ntTSL 513.77□□□□□ -0.214e-8■■□□□ 14.1
YBX3P16989 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC11.67□□□□□ -0.544e-8■■□□□ 14.1
Retrieved 100 of 29,075 protein–RNA pairs in 855.8 ms