RNA–Protein interactions for RNA: ENST00000517691.1

SKP1-204, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 2,033 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-204ENST00000517691 AEBP2Q6ZN18 517 aaPredicted RBP13.09□□□□□ -0.31
SKP1-204ENST00000517691 CHIC1Q5VXU3 224 aa12.42□□□□□ -0.42
SKP1-204ENST00000517691 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
SKP1-204ENST00000517691 SENP3Q9H4L4 574 aaPredicted RBP11.53□□□□□ -0.56
SKP1-204ENST00000517691 PHF23Q9BUL5 403 aaPredicted RBP11.13□□□□□ -0.63
SKP1-204ENST00000517691 FOXD1Q16676 465 aa10.75□□□□□ -0.69
SKP1-204ENST00000517691 MSH5O43196 834 aa10.64□□□□□ -0.71
SKP1-204ENST00000517691 PIAS4Q8N2W9 510 aaPredicted RBP9.8□□□□□ -0.84
SKP1-204ENST00000517691 CACNB1Q02641 598 aaPredicted RBP9.7□□□□□ -0.86
SKP1-204ENST00000517691 POTEHQ6S545 545 aa9.27□□□□□ -0.93
SKP1-204ENST00000517691 PPP6R1Q9UPN7 881 aa9.14□□□□□ -0.95
SKP1-204ENST00000517691 ADRA2BP18089 450 aa9.06□□□□□ -0.96
SKP1-204ENST00000517691 DMRT2Q9Y5R5 561 aa8.95□□□□□ -0.98
SKP1-204ENST00000517691 RNF39Q9H2S5 420 aa8.89□□□□□ -0.99
SKP1-204ENST00000517691 C1QBPQ07021 282 aaKnown RBP8.79□□□□□ -1
SKP1-204ENST00000517691 PLPPR3Q6T4P5 718 aa8.77□□□□□ -1.01
SKP1-204ENST00000517691 MAPK8IP2Q13387 824 aaPredicted RBP8.61□□□□□ -1.03
SKP1-204ENST00000517691 SCAF1Q9H7N4 1312 aaKnown RBP8.55□□□□□ -1.04
SKP1-204ENST00000517691 DCAF8L1A6NGE4 600 aa8.53□□□□□ -1.04
SKP1-204ENST00000517691 DNAJC5BQ9UF47 199 aa8.3□□□□□ -1.08
SKP1-204ENST00000517691 HOXD11P31277 338 aaPredicted RBP8.21□□□□□ -1.1
SKP1-204ENST00000517691 SP7Q8TDD2 431 aaPredicted RBP8.2□□□□□ -1.1
SKP1-204ENST00000517691 PLSCR2Q9NRY7 297 aa8.03□□□□□ -1.12
SKP1-204ENST00000517691 DSG3P32926 999 aa7.93□□□□□ -1.14
SKP1-204ENST00000517691 CHRDL2Q6WN34 429 aa7.88□□□□□ -1.15
SKP1-204ENST00000517691 RNF216Q9NWF9 866 aaPredicted RBP7.87□□□□□ -1.15
SKP1-204ENST00000517691 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.78□□□□□ -1.164e-11■■□□□ 12.2
SKP1-204ENST00000517691 RBM42Q9BTD8 480 aaKnown RBP7.75□□□□□ -1.17
SKP1-204ENST00000517691 CAPN15O75808 1086 aa7.71□□□□□ -1.17
SKP1-204ENST00000517691 LHX8Q68G74 356 aa7.67□□□□□ -1.18
SKP1-204ENST00000517691 CNKSR2Q8WXI2 1034 aa7.66□□□□□ -1.18
SKP1-204ENST00000517691 HAX1O00165 279 aa7.6□□□□□ -1.19
SKP1-204ENST00000517691 SPINK5Q9NQ38 1064 aaPredicted RBP7.6□□□□□ -1.19
SKP1-204ENST00000517691 PPP4R3CPQ6ZMV5 832 aa7.48□□□□□ -1.21
SKP1-204ENST00000517691 U3KPZ7 1027 aaPredicted RBP7.44□□□□□ -1.22
SKP1-204ENST00000517691 PIP4P2Q8N4L2 257 aa7.43□□□□□ -1.22
SKP1-204ENST00000517691 PCDH10Q9P2E7 1040 aa7.4□□□□□ -1.22
SKP1-204ENST00000517691 ZNF219Q9P2Y4 722 aaPredicted RBP7.39□□□□□ -1.23
SKP1-204ENST00000517691 APLP2Q06481 763 aa7.38□□□□□ -1.23
SKP1-204ENST00000517691 ABCB7O75027 752 aa7.36□□□□□ -1.23
SKP1-204ENST00000517691 TRHP20396 242 aaPredicted RBP7.3□□□□□ -1.24
SKP1-204ENST00000517691 EVX2Q03828 476 aa7.3□□□□□ -1.24
SKP1-204ENST00000517691 AKT1S1Q96B36 256 aa7.3□□□□□ -1.24
SKP1-204ENST00000517691 FXR2P51116 673 aaKnown RBP eCLIP7.26□□□□□ -1.25
SKP1-204ENST00000517691 POTEMA6NI47 508 aa7.25□□□□□ -1.25
SKP1-204ENST00000517691 GABBR2O75899 941 aa7.2□□□□□ -1.26
SKP1-204ENST00000517691 POTEGQ6S5H5 508 aa7.2□□□□□ -1.26
SKP1-204ENST00000517691 REM2Q8IYK8 340 aaPredicted RBP7.15□□□□□ -1.27
SKP1-204ENST00000517691 C19orf67A6NJJ6 358 aa7.08□□□□□ -1.28
SKP1-204ENST00000517691 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.06□□□□□ -1.28
SKP1-204ENST00000517691 HNRNPUL2Q1KMD3 747 aaKnown RBP7.06□□□□□ -1.28
SKP1-204ENST00000517691 PITPNM1O00562 1244 aa7.05□□□□□ -1.28
SKP1-204ENST00000517691 NCBP3Q53F19 620 aaKnown RBP7□□□□□ -1.29
SKP1-204ENST00000517691 POTEIP0CG38 1075 aa6.97□□□□□ -1.29
SKP1-204ENST00000517691 CLCN6P51797 869 aa6.97□□□□□ -1.29
SKP1-204ENST00000517691 OTUD5Q96G74 571 aa6.94□□□□□ -1.3
SKP1-204ENST00000517691 SAMD1Q6SPF0 538 aaPredicted RBP6.92□□□□□ -1.3
SKP1-204ENST00000517691 PRKAR2AP13861 404 aaKnown RBP6.88□□□□□ -1.31
SKP1-204ENST00000517691 POLA2Q14181 598 aa6.88□□□□□ -1.31
SKP1-204ENST00000517691 ZBTB12Q9Y330 459 aaPredicted RBP6.85□□□□□ -1.31
SKP1-204ENST00000517691 DCBLD2Q96PD2 775 aa6.82□□□□□ -1.32
SKP1-204ENST00000517691 NPM3O75607 178 aaKnown RBP6.73□□□□□ -1.33
SKP1-204ENST00000517691 LCE2DQ5TA82 110 aaPredicted RBP6.69□□□□□ -1.34
SKP1-204ENST00000517691 CDAN1Q8IWY9 1227 aa6.69□□□□□ -1.34
SKP1-204ENST00000517691 POTEB2H3BUK9 544 aa6.68□□□□□ -1.34
SKP1-204ENST00000517691 SLC4A2P04920 1241 aa6.68□□□□□ -1.34
SKP1-204ENST00000517691 MAMSTRQ6ZN01 415 aa6.67□□□□□ -1.34
SKP1-204ENST00000517691 OSCARQ8IYS5 282 aa6.66□□□□□ -1.34
SKP1-204ENST00000517691 FAM163AQ96GL9 167 aaPredicted RBP6.66□□□□□ -1.34
SKP1-204ENST00000517691 MMRN1Q13201 1228 aa6.65□□□□□ -1.35
SKP1-204ENST00000517691 SPDYE1Q8NFV5 336 aaPredicted RBP6.62□□□□□ -1.35
SKP1-204ENST00000517691 CD44P16070 742 aaKnown RBP6.6□□□□□ -1.35
SKP1-204ENST00000517691 SPNS2Q8IVW8 549 aa6.54□□□□□ -1.36
SKP1-204ENST00000517691 CLEC11AQ9Y240 323 aa6.54□□□□□ -1.36
SKP1-204ENST00000517691 ZNF579Q8NAF0 562 aaKnown RBP6.5□□□□□ -1.37
SKP1-204ENST00000517691 SCUBE2Q9NQ36 999 aa6.5□□□□□ -1.37
SKP1-204ENST00000517691 SPDYE2BA6NHP3 402 aa6.48□□□□□ -1.37
SKP1-204ENST00000517691 SPDYE6P0CI01 402 aa6.48□□□□□ -1.37
SKP1-204ENST00000517691 SPDYE2Q495Y8 402 aa6.48□□□□□ -1.37
SKP1-204ENST00000517691 CHADLQ6NUI6 762 aa6.47□□□□□ -1.37
SKP1-204ENST00000517691 KCNA4P22459 653 aa6.42□□□□□ -1.38
SKP1-204ENST00000517691 C7P10643 843 aa6.42□□□□□ -1.38
SKP1-204ENST00000517691 POTEJP0CG39 1038 aa6.4□□□□□ -1.38
SKP1-204ENST00000517691 SLC39A7Q92504 469 aa6.4□□□□□ -1.39
SKP1-204ENST00000517691 METRNQ9UJH8 293 aa6.38□□□□□ -1.39
SKP1-204ENST00000517691 GALR2O43603 387 aaPredicted RBP6.38□□□□□ -1.39
SKP1-204ENST00000517691 FARP1Q9Y4F1 1045 aaPredicted RBP6.38□□□□□ -1.39
SKP1-204ENST00000517691 MYCNP04198 464 aaPredicted RBP6.35□□□□□ -1.39
SKP1-204ENST00000517691 PRR29P0C7W0 189 aa6.35□□□□□ -1.39
SKP1-204ENST00000517691 PELP1Q8IZL8 1130 aaKnown RBP6.33□□□□□ -1.4
SKP1-204ENST00000517691 ZRANB1Q9UGI0 708 aa6.33□□□□□ -1.4
SKP1-204ENST00000517691 NISCHQ9Y2I1 1504 aa6.32□□□□□ -1.4
SKP1-204ENST00000517691 ASTLQ6HA08 431 aaPredicted RBP6.27□□□□□ -1.41
SKP1-204ENST00000517691 EHMT2Q96KQ7 1210 aa6.26□□□□□ -1.41
SKP1-204ENST00000517691 ST18O60284 1047 aa6.25□□□□□ -1.41
SKP1-204ENST00000517691 TMEM121BQ9BXQ6 578 aaPredicted RBP6.24□□□□□ -1.41
SKP1-204ENST00000517691 SSUH2Q9Y2M2 353 aa6.22□□□□□ -1.41
SKP1-204ENST00000517691 ATMINO43313 823 aaPredicted RBP6.2□□□□□ -1.42
SKP1-204ENST00000517691 PAK3O75914 559 aaPredicted RBP6.16□□□□□ -1.42
SKP1-204ENST00000517691 FBLN2P98095 1184 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms