RNA–Protein interactions for RNA: ENST00000482655.2

GTF3A-207, Transcript of general transcription factor IIIA, humanhuman

TSL 2

Gene GTF3A, Length 829 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-207ENST00000482655 AEBP2Q6ZN18 517 aaPredicted RBP22.31■■□□□ 1.16
GTF3A-207ENST00000482655 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
GTF3A-207ENST00000482655 SENP3Q9H4L4 574 aaPredicted RBP19.07■□□□□ 0.64
GTF3A-207ENST00000482655 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
GTF3A-207ENST00000482655 FOXD1Q16676 465 aa17.65■□□□□ 0.42
GTF3A-207ENST00000482655 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
GTF3A-207ENST00000482655 ADRA2BP18089 450 aa16.79■□□□□ 0.28
GTF3A-207ENST00000482655 PPP6R1Q9UPN7 881 aa16.78■□□□□ 0.28
GTF3A-207ENST00000482655 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
GTF3A-207ENST00000482655 MSH5O43196 834 aa16.45■□□□□ 0.22
GTF3A-207ENST00000482655 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
GTF3A-207ENST00000482655 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
GTF3A-207ENST00000482655 POTEDQ86YR6 584 aa15.33■□□□□ 0.04
GTF3A-207ENST00000482655 MAPK8IP2Q13387 824 aaPredicted RBP15.28■□□□□ 0.04
GTF3A-207ENST00000482655 DMRT2Q9Y5R5 561 aa15.15■□□□□ 0.02
GTF3A-207ENST00000482655 CNKSR2Q8WXI2 1034 aa15.01□□□□□ -0.01
GTF3A-207ENST00000482655 NCBP3Q53F19 620 aaKnown RBP14.97□□□□□ -0.01
GTF3A-207ENST00000482655 RNF216Q9NWF9 866 aaPredicted RBP14.76□□□□□ -0.05
GTF3A-207ENST00000482655 KCNA4P22459 653 aa14.75□□□□□ -0.05
GTF3A-207ENST00000482655 HOXD11P31277 338 aaPredicted RBP14.73□□□□□ -0.05
GTF3A-207ENST00000482655 NPM3O75607 178 aaKnown RBP14.67□□□□□ -0.06
GTF3A-207ENST00000482655 DCAF8L1A6NGE4 600 aa14.59□□□□□ -0.07
GTF3A-207ENST00000482655 DNAJC5BQ9UF47 199 aa14.25□□□□□ -0.13
GTF3A-207ENST00000482655 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.12□□□□□ -0.159e-10■■■□□ 19.1
GTF3A-207ENST00000482655 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
GTF3A-207ENST00000482655 RNF39Q9H2S5 420 aa14.02□□□□□ -0.17
GTF3A-207ENST00000482655 SLC4A2P04920 1241 aa13.88□□□□□ -0.19
GTF3A-207ENST00000482655 C1QBPQ07021 282 aaKnown RBP13.88□□□□□ -0.19
GTF3A-207ENST00000482655 CACNB1Q02641 598 aaPredicted RBP13.87□□□□□ -0.19
GTF3A-207ENST00000482655 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
GTF3A-207ENST00000482655 FOXD4L1Q9NU39 408 aa13.68□□□□□ -0.22
GTF3A-207ENST00000482655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
GTF3A-207ENST00000482655 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
GTF3A-207ENST00000482655 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
GTF3A-207ENST00000482655 APLP2Q06481 763 aa13.57□□□□□ -0.24
GTF3A-207ENST00000482655 SAMD1Q6SPF0 538 aaPredicted RBP13.56□□□□□ -0.24
GTF3A-207ENST00000482655 ZBTB22O15209 634 aa13.53□□□□□ -0.24
GTF3A-207ENST00000482655 CAPN15O75808 1086 aa13.5□□□□□ -0.25
GTF3A-207ENST00000482655 SPINK5Q9NQ38 1064 aaPredicted RBP13.47□□□□□ -0.25
GTF3A-207ENST00000482655 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
GTF3A-207ENST00000482655 ZNF219Q9P2Y4 722 aaPredicted RBP13.38□□□□□ -0.27
GTF3A-207ENST00000482655 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
GTF3A-207ENST00000482655 CSRNP3Q8WYN3 585 aa13.28□□□□□ -0.28
GTF3A-207ENST00000482655 DSG3P32926 999 aa13.26□□□□□ -0.29
GTF3A-207ENST00000482655 ATXN8OSP0DMR3 200 aa13.22□□□□□ -0.29
GTF3A-207ENST00000482655 ABCB7O75027 752 aa13.2□□□□□ -0.3
GTF3A-207ENST00000482655 ATF5Q9Y2D1 282 aaPredicted RBP13.18□□□□□ -0.3
GTF3A-207ENST00000482655 POLA2Q14181 598 aa13.08□□□□□ -0.32
GTF3A-207ENST00000482655 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
GTF3A-207ENST00000482655 FBLN2P98095 1184 aa12.77□□□□□ -0.37
GTF3A-207ENST00000482655 RBM42Q9BTD8 480 aaKnown RBP12.73□□□□□ -0.37
GTF3A-207ENST00000482655 OSCARQ8IYS5 282 aa12.65□□□□□ -0.38
GTF3A-207ENST00000482655 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
GTF3A-207ENST00000482655 SPDYE2BA6NHP3 402 aa12.51□□□□□ -0.41
GTF3A-207ENST00000482655 SPDYE6P0CI01 402 aa12.51□□□□□ -0.41
GTF3A-207ENST00000482655 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
GTF3A-207ENST00000482655 AKT1S1Q96B36 256 aa12.48□□□□□ -0.41
GTF3A-207ENST00000482655 ZNF692Q9BU19 519 aaPredicted RBP12.43□□□□□ -0.42
GTF3A-207ENST00000482655 SSUH2Q9Y2M2 353 aa12.35□□□□□ -0.43
GTF3A-207ENST00000482655 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
GTF3A-207ENST00000482655 SPDYE4A6NLX3 237 aa12.29□□□□□ -0.44
GTF3A-207ENST00000482655 CHRDL2Q6WN34 429 aa12.25□□□□□ -0.45
GTF3A-207ENST00000482655 PABPN1Q86U42 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
GTF3A-207ENST00000482655 SPDYE1Q8NFV5 336 aaPredicted RBP12.21□□□□□ -0.45
GTF3A-207ENST00000482655 PITPNM1O00562 1244 aa12.2□□□□□ -0.46
GTF3A-207ENST00000482655 CLEC11AQ9Y240 323 aa12.17□□□□□ -0.46
GTF3A-207ENST00000482655 POTEHQ6S545 545 aa12.1□□□□□ -0.47
GTF3A-207ENST00000482655 FKBP8Q14318 412 aa12.09□□□□□ -0.47
GTF3A-207ENST00000482655 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
GTF3A-207ENST00000482655 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
GTF3A-207ENST00000482655 PIP4P2Q8N4L2 257 aa12.02□□□□□ -0.49
GTF3A-207ENST00000482655 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.49
GTF3A-207ENST00000482655 PROM2Q8N271 834 aa11.98□□□□□ -0.49
GTF3A-207ENST00000482655 PRKAR2AP13861 404 aaKnown RBP11.91□□□□□ -0.5
GTF3A-207ENST00000482655 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
GTF3A-207ENST00000482655 FBXO3Q9UK99 471 aa11.76□□□□□ -0.53
GTF3A-207ENST00000482655 CREBZFQ9NS37 354 aa11.75□□□□□ -0.53
GTF3A-207ENST00000482655 HAX1O00165 279 aa11.74□□□□□ -0.53
GTF3A-207ENST00000482655 PLEKHG5O94827 1062 aa11.73□□□□□ -0.53
GTF3A-207ENST00000482655 FARP1Q9Y4F1 1045 aaPredicted RBP11.73□□□□□ -0.53
GTF3A-207ENST00000482655 MIER1Q8N108 512 aa11.69□□□□□ -0.54
GTF3A-207ENST00000482655 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
GTF3A-207ENST00000482655 NPM1P06748 294 aaKnown RBP eCLIP11.64□□□□□ -0.55
GTF3A-207ENST00000482655 C19orf67A6NJJ6 358 aa11.6□□□□□ -0.55
GTF3A-207ENST00000482655 ZBTB47Q9UFB7 747 aaPredicted RBP11.58□□□□□ -0.56
GTF3A-207ENST00000482655 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
GTF3A-207ENST00000482655 MNX1P50219 401 aaPredicted RBP11.57□□□□□ -0.56
GTF3A-207ENST00000482655 VASPP50552 380 aaPredicted RBP11.57□□□□□ -0.56
GTF3A-207ENST00000482655 SP7Q8TDD2 431 aaPredicted RBP11.54□□□□□ -0.56
GTF3A-207ENST00000482655 PAK3O75914 559 aaPredicted RBP11.53□□□□□ -0.56
GTF3A-207ENST00000482655 EVX2Q03828 476 aa11.51□□□□□ -0.57
GTF3A-207ENST00000482655 KLHL34Q8N239 644 aa11.47□□□□□ -0.57
GTF3A-207ENST00000482655 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
GTF3A-207ENST00000482655 TSPYL2Q9H2G4 693 aaPredicted RBP11.41□□□□□ -0.58
GTF3A-207ENST00000482655 ZNF579Q8NAF0 562 aaKnown RBP11.39□□□□□ -0.59
GTF3A-207ENST00000482655 RASEFQ8IZ41 740 aa11.37□□□□□ -0.59
GTF3A-207ENST00000482655 CLCN6P51797 869 aa11.36□□□□□ -0.59
GTF3A-207ENST00000482655 FAM212AQ96EL1 285 aa11.36□□□□□ -0.59
GTF3A-207ENST00000482655 NUBP1P53384 320 aa11.35□□□□□ -0.59
GTF3A-207ENST00000482655 IFNLR1Q8IU57 520 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms