Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.06■□□□□ 0.64
SHOX2O60902 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
SHOX2O60902 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.05■□□□□ 0.64
SHOX2O60902 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
SHOX2O60902 AC018553.1-201ENST00000616682 1458 ntBASIC19.05■□□□□ 0.64
SHOX2O60902 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.05■□□□□ 0.64
SHOX2O60902 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 AC012414.1-201ENST00000556676 535 ntBASIC19.05■□□□□ 0.64
SHOX2O60902 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.05■□□□□ 0.64
SHOX2O60902 MIR6084-201ENST00000622012 110 ntBASIC19.05■□□□□ 0.64
SHOX2O60902 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.05■□□□□ 0.64
SHOX2O60902 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.05■□□□□ 0.64
SHOX2O60902 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.05■□□□□ 0.64
SHOX2O60902 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHOX2O60902 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.04■□□□□ 0.64
SHOX2O60902 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SHOX2O60902 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.04■□□□□ 0.64
SHOX2O60902 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.04■□□□□ 0.64
SHOX2O60902 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.04■□□□□ 0.64
SHOX2O60902 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SHOX2O60902 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SHOX2O60902 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.04■□□□□ 0.64
SHOX2O60902 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHOX2O60902 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.03■□□□□ 0.64
SHOX2O60902 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SHOX2O60902 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.03■□□□□ 0.64
SHOX2O60902 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHOX2O60902 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SHOX2O60902 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHOX2O60902 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.02■□□□□ 0.64
SHOX2O60902 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SHOX2O60902 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
SHOX2O60902 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.02■□□□□ 0.64
SHOX2O60902 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.02■□□□□ 0.64
SHOX2O60902 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.02■□□□□ 0.64
SHOX2O60902 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.02■□□□□ 0.64
SHOX2O60902 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SHOX2O60902 AC093677.2-201ENST00000600169 1863 ntBASIC19.02■□□□□ 0.64
SHOX2O60902 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms