Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AC113410.3-201ENST00000623366 203 ntBASIC19.62■□□□□ 0.73
USP29Q9HBJ7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 AL031598.1-201ENST00000561511 1773 ntBASIC19.62■□□□□ 0.73
USP29Q9HBJ7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.62■□□□□ 0.73
USP29Q9HBJ7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 AC093525.10-201ENST00000625130 1569 ntBASIC19.61■□□□□ 0.73
USP29Q9HBJ7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP29Q9HBJ7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 AL353807.1-201ENST00000427475 662 ntBASIC19.6■□□□□ 0.73
USP29Q9HBJ7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 KRT16P5-201ENST00000455284 522 ntBASIC19.6■□□□□ 0.73
USP29Q9HBJ7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 KRT8P41-201ENST00000533985 1514 ntBASIC19.6■□□□□ 0.73
USP29Q9HBJ7 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.6■□□□□ 0.73
USP29Q9HBJ7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP29Q9HBJ7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 LETM1P2-201ENST00000597330 2178 ntBASIC19.59■□□□□ 0.73
USP29Q9HBJ7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 TSPY23P-201ENST00000440136 739 ntBASIC19.59■□□□□ 0.73
USP29Q9HBJ7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.59■□□□□ 0.73
USP29Q9HBJ7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms