Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 AL162412.1-201ENST00000567129 965 ntBASIC16.77■□□□□ 0.28
MMP28Q9H239 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.77■□□□□ 0.28
MMP28Q9H239 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
MMP28Q9H239 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
MMP28Q9H239 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.77■□□□□ 0.27
MMP28Q9H239 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
MMP28Q9H239 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MMP28Q9H239 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
MMP28Q9H239 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.76■□□□□ 0.27
MMP28Q9H239 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 AC006970.2-201ENST00000450065 779 ntBASIC16.76■□□□□ 0.27
MMP28Q9H239 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.76■□□□□ 0.27
MMP28Q9H239 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.76■□□□□ 0.27
MMP28Q9H239 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 AC093525.10-201ENST00000625130 1569 ntBASIC16.76■□□□□ 0.27
MMP28Q9H239 ABALON-201ENST00000629058 1903 ntBASIC16.76■□□□□ 0.27
MMP28Q9H239 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.76■□□□□ 0.27
MMP28Q9H239 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MMP28Q9H239 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MMP28Q9H239 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
MMP28Q9H239 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
MMP28Q9H239 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 AC007322.1-201ENST00000426983 750 ntBASIC16.75■□□□□ 0.27
MMP28Q9H239 CNN2P6-201ENST00000439038 900 ntBASIC16.75■□□□□ 0.27
MMP28Q9H239 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.75■□□□□ 0.27
MMP28Q9H239 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
MMP28Q9H239 FAM21FP-204ENST00000608637 956 ntBASIC16.75■□□□□ 0.27
MMP28Q9H239 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MMP28Q9H239 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MMP28Q9H239 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms