Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF4P78317 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF4P78317 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RNF4P78317 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF4P78317 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF4P78317 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF4P78317 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF4P78317 TSPY17P-201ENST00000450329 467 ntBASIC17.62■□□□□ 0.41
RNF4P78317 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 AL023803.3-201ENST00000615559 522 ntBASIC17.62■□□□□ 0.41
RNF4P78317 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RNF4P78317 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RNF4P78317 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF4P78317 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF4P78317 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 INGX-201ENST00000359239 846 ntBASIC17.61■□□□□ 0.41
RNF4P78317 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF4P78317 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
RNF4P78317 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.61■□□□□ 0.41
RNF4P78317 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF4P78317 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.61■□□□□ 0.41
RNF4P78317 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.61■□□□□ 0.41
RNF4P78317 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF4P78317 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF4P78317 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.61■□□□□ 0.41
RNF4P78317 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 AC005332.7-201ENST00000614046 2005 ntBASIC17.6■□□□□ 0.41
RNF4P78317 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 AC116562.4-201ENST00000641316 2276 ntBASIC17.6■□□□□ 0.41
RNF4P78317 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
RNF4P78317 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 AC007663.1-201ENST00000438948 1240 ntBASIC17.6■□□□□ 0.41
RNF4P78317 ECEL1P2-202ENST00000465689 757 ntBASIC17.6■□□□□ 0.41
RNF4P78317 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
RNF4P78317 AL353719.1-201ENST00000566847 864 ntBASIC17.6■□□□□ 0.41
RNF4P78317 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF4P78317 AC092338.2-201ENST00000568827 1415 ntBASIC17.6■□□□□ 0.41
RNF4P78317 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF4P78317 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF4P78317 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RNF4P78317 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
RNF4P78317 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF4P78317 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RNF4P78317 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF4P78317 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms