Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
FOXA3P55318 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXA3P55318 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA3P55318 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 MIR939-201ENST00000401314 82 ntBASIC14.29□□□□□ -0.12
FOXA3P55318 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
FOXA3P55318 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.29□□□□□ -0.12
FOXA3P55318 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
FOXA3P55318 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
FOXA3P55318 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
FOXA3P55318 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.29□□□□□ -0.12
FOXA3P55318 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
FOXA3P55318 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
FOXA3P55318 CROCCP1-201ENST00000426910 5675 ntBASIC14.28□□□□□ -0.12
FOXA3P55318 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
FOXA3P55318 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.28□□□□□ -0.12
FOXA3P55318 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA3P55318 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 AC106739.1-201ENST00000617035 715 ntBASIC14.28□□□□□ -0.12
FOXA3P55318 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
FOXA3P55318 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.28□□□□□ -0.12
FOXA3P55318 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
FOXA3P55318 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
FOXA3P55318 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA3P55318 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
FOXA3P55318 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.12
FOXA3P55318 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXA3P55318 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXA3P55318 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
FOXA3P55318 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXA3P55318 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms