Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.36■□□□□ 0.85
VCPP55072 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.36■□□□□ 0.85
VCPP55072 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.36■□□□□ 0.85
VCPP55072 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.36■□□□□ 0.85
VCPP55072 TFP1-202ENST00000475455 1573 ntBASIC20.36■□□□□ 0.85
VCPP55072 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.36■□□□□ 0.85
VCPP55072 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.35■□□□□ 0.85
VCPP55072 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.35■□□□□ 0.85
VCPP55072 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.35■□□□□ 0.85
VCPP55072 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 RNF152P1-201ENST00000397754 604 ntBASIC20.35■□□□□ 0.85
VCPP55072 HCG4P8-203ENST00000443049 980 ntBASIC20.35■□□□□ 0.85
VCPP55072 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.35■□□□□ 0.85
VCPP55072 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
VCPP55072 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.35■□□□□ 0.85
VCPP55072 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.35■□□□□ 0.85
VCPP55072 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 AP000974.1-201ENST00000623909 2387 ntBASIC20.35■□□□□ 0.85
VCPP55072 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCPP55072 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VCPP55072 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.34■□□□□ 0.85
VCPP55072 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
VCPP55072 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.34■□□□□ 0.85
VCPP55072 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VCPP55072 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.34■□□□□ 0.85
VCPP55072 MESTP1-201ENST00000404287 994 ntBASIC20.34■□□□□ 0.85
VCPP55072 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.34■□□□□ 0.85
VCPP55072 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.34■□□□□ 0.85
VCPP55072 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
VCPP55072 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.34■□□□□ 0.85
VCPP55072 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCPP55072 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VCPP55072 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.33■□□□□ 0.85
VCPP55072 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.33■□□□□ 0.85
VCPP55072 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.33■□□□□ 0.85
VCPP55072 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VCPP55072 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
VCPP55072 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
VCPP55072 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VCPP55072 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.33■□□□□ 0.85
VCPP55072 FAM86EP-206ENST00000510506 987 ntBASIC20.33■□□□□ 0.85
VCPP55072 AP005242.2-201ENST00000580065 1175 ntBASIC20.33■□□□□ 0.85
VCPP55072 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCPP55072 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
VCPP55072 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VCPP55072 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VCPP55072 IER3-202ENST00000376377 1350 ntBASIC20.33■□□□□ 0.84
VCPP55072 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
VCPP55072 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.32■□□□□ 0.84
VCPP55072 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms